GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004159-TA|BGIBMGA004159-PA|IPR000228|RNA 3'-terminal
phosphate cyclase, IPR013796|RNA 3'-terminal phosphate cyclase, insert
region, IPR013792|RNA 3'-terminal phosphate cyclase/enolpyruvate
transferase, alpha/beta
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0573 - 34815576-34815785,34816117-34816327,34816448-348166...    77   2e-14
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302...    30   1.9  
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   3.3  
04_04_0032 + 22291469-22291818,22292438-22292681,22292873-222930...    29   5.7  
07_01_0813 - 6405897-6405961,6406328-6406901                           28   7.6  
01_03_0127 + 12787664-12787907,12790660-12790715,12792203-127924...    28   7.6  

>03_06_0573 -
           34815576-34815785,34816117-34816327,34816448-34816623,
           34816701-34816882,34817431-34817580,34817654-34817894
          Length = 389

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 80/303 (26%), Positives = 128/303 (42%), Gaps = 34/303 (11%)

Query: 14  TQLEFKPGKIRGGHYVA-DTRTAGSISLLLQVALPCAVMADGPVTLELKGGTNAEMAPQI 72
           T+L +KPG I GG  +  D      I   L+  +   + A  P+++ LKG TN    P +
Sbjct: 82  TKLRYKPGVIVGGRDLEHDCGVHRGIGYFLEPLILLGLFARAPISIRLKGITNDTKDPSV 141

Query: 73  DYMTEVFKHAVKHFGV---DFNLTIHRRGYFPKGGGHVTVEVSPLRH-VQAADVTRGGEV 128
           D    V  H +K FGV      L I  RG  P GGG V + V  ++  ++AA+    G V
Sbjct: 142 DTFRMVTLHMLKQFGVPLEGLELKIESRGAPPLGGGEVFLRVPNIKSTLKAANWADEGMV 201

Query: 129 AAVYGWSYVAGCLPIKMAYSMADGAKEKLRGICKNIHIECYKEE-----------TQLTS 177
             + G S+     P ++   +   A+        ++HI                   + +
Sbjct: 202 KRIRGVSFSTRVSP-QIENRIIYAARGIFNRFIPDVHIFTDHRSGSAGGRSAGYGVSVVA 260

Query: 178 KLSSGYILGGDA-LGKRGVDAV-------------EVGRTAGEMLRDAIRSGACVDSYTQ 223
           + ++G +L  DA +    VD +             ++G     ML + +  G  VDS  Q
Sbjct: 261 ETTTGCLLSADATVSYPNVDEMNEESENLELTSPEDLGVQVASMLLEEVAQGGVVDSAHQ 320

Query: 224 DQLIVYMALA-DGRSRVRVGEITLHTRTAIHFAELIAKAKFSIQPDGDQNVI--ECDGAG 280
             L +  AL+    S+VRVG++T +    +         KF I+PD + N +  +C GAG
Sbjct: 321 GLLFILCALSPPDVSKVRVGQLTPYAIETLRNIRDFLDVKFIIKPDPNSNTVTLKCVGAG 380

Query: 281 YHN 283
             N
Sbjct: 381 VKN 383


>08_01_0343 -
           3025577-3025810,3026428-3026505,3026630-3026748,
           3027566-3027645,3028034-3028107,3028536-3028620,
           3028704-3028789,3028968-3029038,3029126-3029207,
           3029490-3029531,3029552-3029584,3029699-3029794,
           3030163-3030414,3030970-3031149,3032079-3032119,
           3032341-3032470,3032504-3032606,3032686-3032773,
           3033151-3033304,3033688-3033739,3033815-3033894,
           3034478-3034789,3034886-3034955,3035033-3035100,
           3035405-3035678,3036408-3036580,3037036-3037128,
           3037228-3037443
          Length = 1121

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 146 AYSMADGAKEKLRGICKNIHIECYKEETQLTS 177
           A S  DGA + LRG+C  IH   YK   ++ S
Sbjct: 86  AVSPCDGADDVLRGVCHLIHDIMYKTNMEIDS 117


>04_04_0942 -
          29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 33 RTAGSISLLLQVALPCAVMADGPVTLELKGGTNAEMAPQIDYMTE 77
          R A ++ L + VALP AV+  GPV+  L      +  P +D   E
Sbjct: 20 RAAAALFLAIFVALPFAVLYRGPVSRSLHDSWEWDPLPSLDASEE 64


>04_04_0032 +
           22291469-22291818,22292438-22292681,22292873-22293052,
           22293843-22294070
          Length = 333

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 94  IHRRGYFPKGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWS 135
           IH   YFP GG H T  V+P   V  +DV +  E+AA  G S
Sbjct: 219 IHVTAYFPLGGRHSTSTVNP---VLDSDVLK--EIAAAKGKS 255


>07_01_0813 - 6405897-6405961,6406328-6406901
          Length = 212

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 102 KGGGHVTVEVSPLRHVQAADVTRGGEVAAVYGWS 135
           +GGG  T    PL H+  A   RGG +A    W+
Sbjct: 116 EGGGGATAAPLPLLHLNPASSIRGGALARPPPWA 149


>01_03_0127 +
           12787664-12787907,12790660-12790715,12792203-12792473,
           12792600-12792832
          Length = 267

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 139 GCLPIKMAYSMADGAKEKLRGICKNIHIECYKEETQLTS 177
           GCLP K+A   AD       G  K ++   Y+  +QL+S
Sbjct: 119 GCLPQKLAVPRADDGDLDPSGCLKTLNAGAYEFNSQLSS 157


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,882,240
Number of Sequences: 37544
Number of extensions: 378113
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 7
length of query: 288
length of database: 14,793,348
effective HSP length: 81
effective length of query: 207
effective length of database: 11,752,284
effective search space: 2432722788
effective search space used: 2432722788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)