GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004159-TA|BGIBMGA004159-PA|IPR000228|RNA 3'-terminal
phosphate cyclase, IPR013796|RNA 3'-terminal phosphate cyclase, insert
region, IPR013792|RNA 3'-terminal phosphate cyclase/enolpyruvate
transferase, alpha/beta
         (288 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.44 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.44 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 46  LPCAVMADGPVTLE-LKGGTNAEMAPQIDYMTEVFKHAVKHFGVDFNLTI 94
           L C V  D PVT+  LKGG   E+ P  +Y   V K  V   GV   L I
Sbjct: 827 LHCEVHGDTPVTVTWLKGG-KIELNPSTNYRVTV-KREVTPDGVIAQLQI 874


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 46  LPCAVMADGPVTLE-LKGGTNAEMAPQIDYMTEVFKHAVKHFGVDFNLTI 94
           L C V  D PVT+  LKGG   E+ P  +Y   V K  V   GV   L I
Sbjct: 823 LHCEVHGDTPVTVTWLKGG-KIELNPSTNYRVTV-KREVTPDGVIAQLQI 870


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 112 SPLRHVQAADVTRGGEVAAVYGWSYVA 138
           SPL  V + + T  GEVA++  + +VA
Sbjct: 488 SPLGSVSSTESTCSGEVASLTEYHHVA 514


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 80  KHAVKHFGVDFNLTIHRR 97
           ++  K F V  NL++HRR
Sbjct: 123 EYCSKSFSVKENLSVHRR 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,533
Number of Sequences: 429
Number of extensions: 2632
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 288
length of database: 140,377
effective HSP length: 57
effective length of query: 231
effective length of database: 115,924
effective search space: 26778444
effective search space used: 26778444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)