GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004145-TA|BGIBMGA004145-PA|IPR006595|CTLH, C-terminal to
LisH motif
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 13/65 (20%), Positives = 21/65 (32%)

Query: 91  EDGANGVATSVISHTGRPHKRSNXXXXXXXXXXXXXXXXMAPAANGDHVGDHCALHPTPR 150
           +D  N +A   +   GR  K+S                    +A    +G    LH T  
Sbjct: 354 DDLLNDLAAHKMHGRGRSGKKSKFNAAVAAAVQSSSIVSSPDSARHQRIGGCNGLHTTTA 413

Query: 151 YTIYL 155
           +  +L
Sbjct: 414 HNRFL 418


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 133 AANGDHVGDHCALH 146
           A+NG    +HC LH
Sbjct: 119 ASNGKIYANHCELH 132


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,621
Number of Sequences: 429
Number of extensions: 899
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)