GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004143-TA|BGIBMGA004143-PA|IPR001841|Zinc finger,
RING-type, IPR004162|Seven in absentia protein
         (210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.056
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 84  THLLADARLREESATCPNCRVEISKTSASRNLAVEKTVSELPLECKYCTSVFP-RHSLPN 142
           +HL +  +  E+   C  C    +   A           E P +C+YC+  F  + +L  
Sbjct: 79  SHLRSHGKEGEDPYRCNICGKTFA-VPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSV 137

Query: 143 HEENQCEERSYK 154
           H     +ER YK
Sbjct: 138 HRRIHTKERPYK 149


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/45 (26%), Positives = 18/45 (40%)

Query: 102 CRVEISKTSASRNLAVEKTVSELPLECKYCTSVFPRHSLPNHEEN 146
           C  ++S T       + K    L L     T++   HS+   EEN
Sbjct: 77  CVEKVSTTIVPTTQEINKPFKRLELFNITTTTIHSIHSIDGDEEN 121


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.133    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,801
Number of Sequences: 429
Number of extensions: 1914
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 210
length of database: 140,377
effective HSP length: 55
effective length of query: 155
effective length of database: 116,782
effective search space: 18101210
effective search space used: 18101210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 42 (21.0 bits)