GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004142-TA|BGIBMGA004142-PA|IPR003439|ABC transporter
related, IPR011527|ABC transporter, transmembrane region, type 1,
IPR003593|AAA ATPase, IPR001140|ABC transporter, transmembrane region
         (581 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   4.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   7.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   9.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 332 HGDIEFKNVTFAYPTRPEAVILKDFNLKIPA-GKTVAIVGTSG 373
           H D++ +N+  A   +  AV L DF L I   G+  A  G +G
Sbjct: 32  HRDLKPENLLLASKAKGAAVKLADFGLAIEVQGEAQAWFGFAG 74


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 78  LLSQVGEKVATQMKQDLFVSI 98
           LLS + E VA +M+QDL  S+
Sbjct: 237 LLSVLPEHVAVKMRQDLGASL 257


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 6   YLVFEPAYILKSALAVAFLNVYIPAMLGVIVN 37
           +   E  ++LK  L     + YIP  L VI++
Sbjct: 231 FTCLEVVFVLKRRLGYYLFHTYIPTCLIVIMS 262


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,487
Number of Sequences: 429
Number of extensions: 5073
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 581
length of database: 140,377
effective HSP length: 61
effective length of query: 520
effective length of database: 114,208
effective search space: 59388160
effective search space used: 59388160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)