GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004140-TA|BGIBMGA004140-PA|IPR011762|Acetyl-coenzyme A
carboxyltransferase, N-terminal, IPR011763|Acetyl-coenzyme A
carboxyltransferase, C-terminal, IPR000022|Carboxyl transferase
         (557 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    27   0.54 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   6.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 378 GSHFIQLCAARKIPLVFLQNITGFMVGKDAEAGGIAKNGAKMVTAVSCFKGPK 430
           G H IQ  A     LV + +   F +G DA  G +A     M+T V+ F G K
Sbjct: 200 GHHLIQTFAPST--LVVMLSWFSFWLGLDAIPGRVALLVTSMLTLVTMFTGLK 250


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 6/56 (10%)

Query: 291 DQRARVYSSKIEEPVHDIQDLHGIVGANIQR-----PFDIREVISRIVDGSRFHEF 341
           DQ      SK+ + ++D+  + G+ G  +       P D+R + SR+ + +R H F
Sbjct: 179 DQSQEYVRSKLVDFLNDLVAI-GVAGFRVDAAKHMWPSDLRTIYSRVRNLNRTHGF 233


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,729
Number of Sequences: 429
Number of extensions: 6363
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 557
length of database: 140,377
effective HSP length: 61
effective length of query: 496
effective length of database: 114,208
effective search space: 56647168
effective search space used: 56647168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)