GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004134-TA|BGIBMGA004134-PA|undefined
         (276 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.97 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 137  QKPEENPSFSLYFTRAWQDSVLVSLHNLLAT 167
            Q P  +P   L    A++D+V V  +NL+AT
Sbjct: 1284 QLPPSSPQPRLTVNHAYRDAVTVPGNNLIAT 1314


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 154 QDSVLV-SLHNLLATVFQCMPQPTLTSYESDAILVKKLQDK 193
           Q S L+ +L N+LA V + M +    + +  A   K LQDK
Sbjct: 364 QHSQLIDTLENVLAIVDRLMDETNQLTLQETADAFKDLQDK 404


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 64  WSHLDSLIFTKLEIHVQPAIRKLEYSL 90
           + H D  +   L++H+Q AIR  EY L
Sbjct: 671 YKHKDVDVTLPLDLHIQNAIR--EYGL 695


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,108
Number of Sequences: 429
Number of extensions: 3266
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 276
length of database: 140,377
effective HSP length: 57
effective length of query: 219
effective length of database: 115,924
effective search space: 25387356
effective search space used: 25387356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)