GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004131-TA|BGIBMGA004131-PA|undefined
         (430 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 176  SLQNAFARKPTVLRKVIRAITTGLNSGNSEDTKARVLPHLRS 217
            ++ +A+    TV    + A  T ++SG+SED +  +  H+ S
Sbjct: 1295 TVNHAYRDAVTVPGNNLIATNTTVSSGSSEDHRRPLSEHIYS 1336


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 102 MPKNKFVQFQNTLKTFDPNKETPVDLFRKIEQLFGE 137
           MP ++F +     ++  P    PV+  ++++ LF E
Sbjct: 1   MPSSEFSKISKVDRSTSPLPRKPVNPVQELKALFAE 36


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,331
Number of Sequences: 429
Number of extensions: 4908
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 2
length of query: 430
length of database: 140,377
effective HSP length: 60
effective length of query: 370
effective length of database: 114,637
effective search space: 42415690
effective search space used: 42415690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)