GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004130-TA|BGIBMGA004130-PA|IPR003767|Malate/L-lactate
dehydrogenase
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 284 FAPGFEDRISNCLQHWRNLEPMDP 307
           F  GF   I  C+  WRN     P
Sbjct: 44  FVTGFVGNIITCIVIWRNPSMQTP 67


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 156 GTNPIALAAPAKDGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDAKLA 215
           GT      +PA    +L   L+  AVA   V        P P G +    G + + +  A
Sbjct: 25  GTIQACTTSPATA--SLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAA 82

Query: 216 FETAKLLP 223
             T+ + P
Sbjct: 83  RTTSSMYP 90


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,956
Number of Sequences: 429
Number of extensions: 4403
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 2
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)