GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004122-TA|BGIBMGA004122-PA|undefined
         (236 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.61 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 22  SVSAEHAELQAIIDAINSPSTDPATATTLAEIFYSFLRISPQPVHIEPEIIDFPLPDGGA 81
           ++S +HA+ QA        S  P +     + F S   +      +E  +++  L D   
Sbjct: 286 TLSTQHAKSQA--------SLPPVSYLKAVDAFMSVCTVFVFMALMEYCLVNIVLGDSDT 337

Query: 82  VSEPVKPTPSPAVVGP--AALNQSSPLV--QLIVICSRRSPTAAGGYAPG 127
             +P  P P P+  GP  A L++   +   +  ++ S RS  +  G  PG
Sbjct: 338 PPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPG 387


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 77  PDGGAVSEPVKPTPS 91
           P GG++  PV PTP+
Sbjct: 151 PRGGSLPTPVTPTPT 165


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 35  DAINSPSTDPATATTLAEIFYSFLRI 60
           D + +P+ + + +TTL+   YS L +
Sbjct: 180 DLVANPTANYSASTTLSHAEYSMLLV 205


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,041
Number of Sequences: 429
Number of extensions: 1803
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 236
length of database: 140,377
effective HSP length: 56
effective length of query: 180
effective length of database: 116,353
effective search space: 20943540
effective search space used: 20943540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)