GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004115-TA|BGIBMGA004115-PA|undefined
         (286 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 263 TPVIVANPEIEVNPIDI 279
           T  +V NPEIE+  +DI
Sbjct: 167 TDPLVVNPEIELPQLDI 183


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
          protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 70 LDLTAMTIPDLSNALQDPKTEP 91
          L + A+T+PDLS  +Q  + +P
Sbjct: 60 LPVKAITLPDLSIPMQLGRRQP 81


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 147 LVPYLENALNVIMDAMFAGHEVTS 170
           LVPYLEN  N +   + AG +  S
Sbjct: 471 LVPYLENKGNGVYAWIGAGRDSDS 494


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,800
Number of Sequences: 429
Number of extensions: 1494
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 286
length of database: 140,377
effective HSP length: 57
effective length of query: 229
effective length of database: 115,924
effective search space: 26546596
effective search space used: 26546596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)