GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004113-TA|BGIBMGA004113-PA|undefined
         (350 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   9.1  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 112 MDSFSDIMPGTGLLTWVKGAVASGGILQRVAEKAKNSVDSM 152
           +D++   MP +G+  WV G      ++ R  E+    + +M
Sbjct: 327 VDNWMTYMPPSGIPNWVPGNHDQLRLVSRFGEEKARMITTM 367


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 112 MDSFSDIMPGTGLLTWVKGAVASGGILQRVAEKAKNSVDSM 152
           +D++   MP +G+  WV G      ++ R  E+    + +M
Sbjct: 327 IDNWMTYMPPSGIPNWVPGNHDQLRLVSRFGEEKARMITTM 367


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 5    RKKIPDPPTPVPSTG 19
            R++ P PP P PS+G
Sbjct: 1351 RQQQPPPPPPPPSSG 1365


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 16  PSTGNLLS-NVAPPLQLPNFVTAVAEPMPTS 45
           P +G  L+  V   L L  F+  VAE MPT+
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAESMPTT 250


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 16  PSTGNLLS-NVAPPLQLPNFVTAVAEPMPTS 45
           P +G  L+  V   L L  F+  VAE MPT+
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAESMPTT 250


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 16  PSTGNLLS-NVAPPLQLPNFVTAVAEPMPTS 45
           P +G  L+  V   L L  F+  VAE MPT+
Sbjct: 220 PDSGEKLTLGVTILLSLTVFLNLVAESMPTT 250


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 16  PSTGNLLS-NVAPPLQLPNFVTAVAEPMPTS 45
           P +G  L+  V   L L  F+  VAE MPT+
Sbjct: 288 PDSGEKLTLGVTILLSLTVFLNLVAESMPTT 318


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,796
Number of Sequences: 429
Number of extensions: 3087
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 350
length of database: 140,377
effective HSP length: 58
effective length of query: 292
effective length of database: 115,495
effective search space: 33724540
effective search space used: 33724540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)