GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004112-TA|BGIBMGA004112-PA|IPR005822|Ribosomal protein
L13, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site, IPR001930|Peptidase M1, membrane alanine
aminopeptidase
         (763 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.25 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.25 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    25   2.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    25   3.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   7.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   7.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 98   GDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIHARSILPCQDTP 151
            G    IK+   +SP A  + WL P + +G    Y L+++      +  H +  LP ++T 
Sbjct: 1215 GSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKNTY 1273

Query: 152  FVKFTYDAEVTAPEEFTVLMSALRGESRSTKTTFNQP 188
            F     D +     +F V  S   GE +S+K     P
Sbjct: 1274 FE--ATDLQQHVEYQFWVTGSTRVGEGQSSKVAAQVP 1308


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 98   GDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPY-LFSQC-----QPIHARSILPCQDTP 151
            G    IK+   +SP A  + WL P + +G    Y L+++      +  H +  LP ++T 
Sbjct: 1211 GSPADIKV-VVSSPQALFISWLPPLEPNGIITKYNLYTRVVDGREELNHGKRTLPAKNTY 1269

Query: 152  FVKFTYDAEVTAPEEFTVLMSALRGESRSTKTTFNQP 188
            F     D +     +F V  S   GE +S+K     P
Sbjct: 1270 FE--ATDLQQHVEYQFWVTGSTRVGEGQSSKVAAQVP 1304


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 725 VTNQIRQIRYVPKRLDHIPEEEVKNYPK 752
           V  +++QI  + +  D IP+E+ + YPK
Sbjct: 13  VQAELKQINVIFRHGDRIPDEKNEMYPK 40


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)

Query: 728 QIRQIRYVPKRLDHIPEEEVKNYPK 752
           +++QI  + +  D IP+E+ + YPK
Sbjct: 1   ELKQINVIFRHGDRIPDEKNEMYPK 25


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 562 YVRPLYRDLYDWEDVRNQAIENFLKNEQY 590
           Y   LY D YD+ ++      + L+N+ Y
Sbjct: 18  YAEELYSDKYDYVNIDEILANDRLRNQYY 46


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 562 YVRPLYRDLYDWEDVRNQAIENFLKNEQY 590
           Y   LY D YD+ ++      + L+N+ Y
Sbjct: 18  YAEELYSDKYDYVNIDEILANDRLRNQYY 46


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,347
Number of Sequences: 429
Number of extensions: 11556
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 6
length of query: 763
length of database: 140,377
effective HSP length: 63
effective length of query: 700
effective length of database: 113,350
effective search space: 79345000
effective search space used: 79345000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)