GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004107-TA|BGIBMGA004107-PA|IPR002073|3'5'-cyclic
nucleotide phosphodiesterase
         (458 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    24   3.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    24   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   9.3  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 188 LSAATEGAPPSTV----ACIERAVDMLRTSELY 216
           + AA  GA  S +    AC+ + ++ML+ +ELY
Sbjct: 54  IQAAKNGADMSQLGCLKACVMKRIEMLKGTELY 86


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)

Query: 188 LSAATEGAPPSTV----ACIERAVDMLRTSELY 216
           + AA  GA  S +    AC+ + ++ML+ +ELY
Sbjct: 54  IQAAKNGADMSQLGCLKACVMKRIEMLKGTELY 86


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 120 GLTKTTSHIVFVCEPSAGEGDRGRGSLHSIRRGSLDVRSVAS 161
           G T   S +     P  G G  G GS  ++  GS +  S AS
Sbjct: 580 GKTSPNSAVRKCMSPINGSGASGSGSAENLSSGSNNQTSSAS 621


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 209 MLRTSELYSPQMRDETKLRVEDPIATDLIGALLSTTGQL 247
           ML T+   +      TK+   D  A  ++G LL + GQ+
Sbjct: 132 MLTTTITLTLLAYQATKIHAVDTYAASVVGYLLYSLGQV 170


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,013
Number of Sequences: 429
Number of extensions: 4897
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 458
length of database: 140,377
effective HSP length: 60
effective length of query: 398
effective length of database: 114,637
effective search space: 45625526
effective search space used: 45625526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)