GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004104-TA|BGIBMGA004104-PA|IPR001606|AT-rich interaction
region
         (351 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.9  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 5  YNIDGTPINRLPIMAKSVLDLY 26
          YNI    +NRL I A  +L+L+
Sbjct: 49 YNIISAAVNRLNIPANEILELF 70


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl
          cyclase beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 5  YNIDGTPINRLPIMAKSVLDLY 26
          YNI    +NRL I A  +L+L+
Sbjct: 49 YNIISAAVNRLNIPANEILELF 70


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 337 SQNSNGQNGHRQ 348
           +QN+N QNG+RQ
Sbjct: 449 NQNANKQNGNRQ 460


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 15  LPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEII---KGLRLPSSITSAAFTL 67
           +P++   ++ +Y L   V+  GGL E     L++  +    GL +  S  +A F +
Sbjct: 56  IPVVMAGIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAI 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 227 HSPQPELEPQREALNLSESPNS 248
           H  QP L PQ ++ + S S  S
Sbjct: 437 HDDQPPLSPQSDSSSSSRSAES 458


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,416
Number of Sequences: 429
Number of extensions: 2712
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 9
length of query: 351
length of database: 140,377
effective HSP length: 58
effective length of query: 293
effective length of database: 115,495
effective search space: 33840035
effective search space used: 33840035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)