GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004103-TA|BGIBMGA004103-PA|IPR001436|Alpha crystallin,
IPR010916|TonB box, N-terminal, IPR002068|Heat shock protein Hsp20,
IPR008978|HSP20-like chaperone
         (198 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.28 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 173  KQPEAASSKPEQQQPREQ 190
            +QP+  S +P+QQQP+ Q
Sbjct: 1515 QQPQQQSQQPQQQQPQPQ 1532



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 173  KQPEAASSKPEQQQPREQ 190
            +QP+    + +QQQP++Q
Sbjct: 1503 QQPQQQQQQQQQQQPQQQ 1520



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 172  AKQPEAASSKPEQQQPREQ 190
            ++QP+    +P+QQQ ++Q
Sbjct: 1521 SQQPQQQQPQPQQQQQQQQ 1539



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 167  TKTGPAKQPEAASSKPEQQQPREQMV 192
            T T   +QP+    + +QQQ ++Q +
Sbjct: 1442 TLTSAPQQPQQQQQQQQQQQQQQQQL 1467



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 174  QPEAASSKPEQQQPREQ 190
            QP+    + +QQQP++Q
Sbjct: 1530 QPQQQQQQQQQQQPQQQ 1546


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 172 AKQPEAASSKPEQQQPREQMVPIVTSP 198
           A Q       P QQQ  +Q   +VTSP
Sbjct: 213 ASQQSQPGMHPRQQQQAQQHQGVVTSP 239


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 134 VNDLVSTLSSDGVLTVTAPKRPPPNAGERIVPITKT 169
           VN+ V   S + VLTVTAP       G  I P T+T
Sbjct: 289 VNNSVGGESVETVLTVTAP------LGAEIEPSTQT 318


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 166 ITKTGPAKQPEAASSKPEQQQPREQ 190
           IT T  A+Q +    + +QQQ ++Q
Sbjct: 787 ITTTTGARQQQQQQQQQQQQQQQQQ 811


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,854
Number of Sequences: 429
Number of extensions: 2251
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 198
length of database: 140,377
effective HSP length: 55
effective length of query: 143
effective length of database: 116,782
effective search space: 16699826
effective search space used: 16699826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)