Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004100-TA|BGIBMGA004100-PA|IPR010492|GINS complex, Psf3
component
(196 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.27
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.27
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.27
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.27
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.36
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.36
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.36
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.36
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 24 1.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 1.9
AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein. 22 3.4
EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein. 21 7.8
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 21 7.8
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.27
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 73
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.27
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 73
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.27
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 73
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 255
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.27
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 73
VPC + + +GF P + L G ++ + L + +L + P VS +P
Sbjct: 271 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAETLPQVSDAIP 323
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.36
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 75
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 257
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.36
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 75
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 257
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.36
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 75
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 203 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 257
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.4 bits (53), Expect = 0.36
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELPKI 75
VPC + + +GF P + L G ++ + L + +L + P S +P I
Sbjct: 271 VPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLI 325
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.8 bits (49), Expect = 1.1
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 21 VPCKFLHDLPKMGFLDPSAADVDLKAGCSVEIPLWLAESLYSRRPPLVSVELP 73
VPC + + +GF P + L G ++ + L + ++ + P S +P
Sbjct: 240 VPCVLIASMAVLGFTLPPDSGEKLSLGVTILLSLTVFLNMVAETMPATSDAVP 292
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.0 bits (47), Expect = 1.9
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 111 DIKSEVAATLNNTYRQRFRMLLAASMSSDSINTMQPLSASERIQAADASN 160
DI +L N Y+ R + S + I + PLS + ++ +N
Sbjct: 577 DIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVPDSVELLFINN 626
>AJ308527-1|CAC33429.1| 57|Apis mellifera defensin protein.
Length = 57
Score = 22.2 bits (45), Expect = 3.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 79 SYREILNADACAVDLHKLGQ 98
S++ +N ACA + H LG+
Sbjct: 25 SFKGQVNDSACAANCHSLGK 44
>EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase
protein.
Length = 200
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 18 TEKVPCKFLHDLPKMGFLDPS 38
T+K P K D+ +G LDP+
Sbjct: 79 TDKHPPKDFGDVDSLGNLDPA 99
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 21.0 bits (42), Expect = 7.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 18 TEKVPCKFLHDLPKMGFLDPS 38
T+K P K D+ +G LDP+
Sbjct: 95 TDKHPPKDFGDVDSLGNLDPA 115
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.318 0.130 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,583
Number of Sequences: 429
Number of extensions: 1844
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 196
length of database: 140,377
effective HSP length: 55
effective length of query: 141
effective length of database: 116,782
effective search space: 16466262
effective search space used: 16466262
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)
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