Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004099-TA|BGIBMGA004099-PA|IPR000637|HMG-I and HMG-Y,
DNA-binding, IPR007829|TM2
(1004 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 25 2.3
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 24 5.4
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 24 5.4
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 24 5.4
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 24 5.4
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 24 5.4
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 24 5.4
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 24 5.4
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 24 5.4
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 24 5.4
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 24 5.4
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 2.3
Identities = 13/84 (15%), Positives = 34/84 (40%)
Query: 476 ENRIETLKTHYLRSPQNTDIGSSSNVSLPQSPELSLVENISVCKDMISSTEHIGNLNEKQ 535
E ++ K Y + + + S + +S E ++ N + + + + N N
Sbjct: 46 EQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNY 105
Query: 536 ERNTAAISHHSTYLISEVDVTIPL 559
N + +++ I ++ V +P+
Sbjct: 106 NTNYKKLQYYNIINIEQIPVPVPI 129
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 34 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 81
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 34 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 81
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 34 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 81
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 34 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 81
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 267 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 314
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 267 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 314
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 267 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 314
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 267 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 314
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 267 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 314
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 223 SSISTHSVPKKSRTSITSEERTPTKKNESDSKKSITDNERKSLKEPAV 270
+S +S ++ + ER K E+ ++S ER+ KEP +
Sbjct: 256 TSCKRYSRSREREQKLYKNEREYRKYGETSKERSRNRTEREKSKEPKI 303
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.309 0.126 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,928
Number of Sequences: 429
Number of extensions: 10487
Number of successful extensions: 56
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 12
length of query: 1004
length of database: 140,377
effective HSP length: 65
effective length of query: 939
effective length of database: 112,492
effective search space: 105629988
effective search space used: 105629988
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)
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