GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004098-TA|BGIBMGA004098-PA|undefined
         (414 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    29   0.073
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    29   0.073
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.22 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.39 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   6.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   8.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 0.073
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 231 QNSSGDTLIPNNQECLSKNSLSNQNEKSPXXXXXXXXILNVSR 273
           Q    D L+ NN   L +N++SN N+++         I  V R
Sbjct: 364 QEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAAISEVQR 406


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 29.1 bits (62), Expect = 0.073
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 231 QNSSGDTLIPNNQECLSKNSLSNQNEKSPXXXXXXXXILNVSR 273
           Q    D L+ NN   L +N++SN N+++         I  V R
Sbjct: 402 QEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAAISEVQR 444


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.22
 Identities = 41/214 (19%), Positives = 79/214 (36%), Gaps = 18/214 (8%)

Query: 49   RNDEEEILNSSVDGKDSTLKKSNIASNENNVTSNYYETAEDIQKILESPKPDDQENATML 108
            +  EE+ +N      + ++  +N+ +  N  T++    +     I   P      N+  +
Sbjct: 812  KKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITV 871

Query: 109  PDDTLRD-KTYTQTLAPTLQDVLNDFVTESDDSDKEPKMEIVEDSNKSIDDGNESKFP-- 165
              D + D KT   T  P           ++ +   +P + +V+ S +S+   N+  FP  
Sbjct: 872  EKDVINDVKTQITTNTPA---------KKATNIGGKP-VAVVKSSAQSLLQSNQQHFPHH 921

Query: 166  QDDDSSNMAITDIAKNAKGLSAXXXXXXXXXXXXHQDINSNKDKPNNIKAPEKEKVLDQH 225
            Q   S++  +  I  +   +                ++ +N      I  P K  V  Q 
Sbjct: 922  QIQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNL---TTILPPVK--VQSQQ 976

Query: 226  HNKQSQNSSGDTLIPNNQECLSKNSLSNQNEKSP 259
             ++QSQ       I  NQ   S    +N  ++SP
Sbjct: 977  QSQQSQQQQQQQTIVTNQAGKSILQTANIKQQSP 1010


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 85  ETAEDIQKILESPKPDDQENATMLPD-DTLRDKTYTQTLAPTLQDVLNDFVT-ESDDSDK 142
           ET +   +I   PK +  ENA +L + +  +DK+     +   + V    +  +  +++ 
Sbjct: 464 ETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSEVSKWVQKGQICLKEKENEI 523

Query: 143 EPKMEIVEDSNKSIDD 158
           + K+E+ ED NKS +D
Sbjct: 524 DFKIEVTEDCNKSFND 539


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 351 CLKSVNLFADQFNNLESDDSE 371
           CLK  NL  D  ++L  D+SE
Sbjct: 27  CLKQENLNLDDIDSLLEDESE 47


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 11/52 (21%), Positives = 26/52 (50%)

Query: 206 NKDKPNNIKAPEKEKVLDQHHNKQSQNSSGDTLIPNNQECLSKNSLSNQNEK 257
           N++     +   KE+  D+   ++S+     + + NN +  + N+ +N N+K
Sbjct: 52  NENSYRKYRETSKERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNYNKK 103


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 223 DQHHNKQSQNSSGDTLIPNNQECLSKNSLSNQNE 256
           +Q+ N Q+ N+  D    NN++  +    +NQN+
Sbjct: 418 NQNDNIQNTNNQNDNNQKNNKKNANNQKNNNQND 451


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 16/63 (25%), Positives = 23/63 (36%)

Query: 110 DDTLRDKTYTQTLAPTLQDVLNDFVTESDDSDKEPKMEIVEDSNKSIDDGNESKFPQDDD 169
           DDT  D  YT  +  +  D ++D+  E   S    +    +  N   DD          D
Sbjct: 375 DDTYMDSGYTNEIDFSFPDSVSDYPLELKGSPDGFESVTSQYKNIREDDARHIPHASVTD 434

Query: 170 SSN 172
           S N
Sbjct: 435 SEN 437


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 206 NKDKPNNIKAPEKEKVLDQHHNKQSQNSSGDTLIPNNQECLSKNSLSNQNEK 257
           N D   NI   EK + +   +   S++      I  N +C   +SLS+ N+K
Sbjct: 108 NDDNFRNIS--EKYQEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDK 157


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 236 DTLIPNNQECLSKNSLSNQNEKSP 259
           DT++PN+ E     S     E+ P
Sbjct: 20  DTVVPNSGELFKAGSAEQPKEQEP 43


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.301    0.121    0.317 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,768
Number of Sequences: 429
Number of extensions: 4956
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 10
length of query: 414
length of database: 140,377
effective HSP length: 59
effective length of query: 355
effective length of database: 115,066
effective search space: 40848430
effective search space used: 40848430
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
S2: 45 (22.2 bits)