GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004095-TA|BGIBMGA004095-PA|undefined
         (569 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    31   0.026
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    25   1.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    24   2.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   9.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   9.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 31.1 bits (67), Expect = 0.026
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 7/56 (12%)

Query: 152 QESTSRCDNDQSDSTEVAMAGDIQDKTNTSVTNDPDNPITEVKVFCDLDQTKIKPL 207
           +++ +R ++D  D+ EV+M    ++  N S T   D+ I + K+FC+L+  K+K L
Sbjct: 166 EQTINRKNSDYLDNQEVSM----ENTENKSCT---DSDIEKYKMFCNLENVKLKEL 214


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 141 ATEKKKFLEYLQESTSRCDNDQSDSTEVAMAGDIQDKTN 179
           A E++   + L  S+   DND+  S +V   G  QD  N
Sbjct: 13  AEEQQPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSEN 51


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 141 ATEKKKFLEYLQESTSRCDNDQSDSTEVAMAGDIQDKTN 179
           A E++   + L  S+   DND+  S +V   G  QD  N
Sbjct: 13  AEEQQPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSEN 51


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 212 YP--TLRQLRFANGVLKVIKERLCVCGYISLSTLVASEIGETPLDAKCFKIFLQKLANNG 269
           YP  +   +++ +G+  V + ++  CG + +  L    +GE  +     KI +  L +N 
Sbjct: 106 YPNWSYNDVKYCDGLTSVYRMQVDKCGRLWI--LDTGILGEKQICRP--KIHVFSLHDNK 161

Query: 270 HIKMYRVKWPGFQNRYTNFICASHVKATDDIIKSKYKEIS 309
            I MYR     F+        A  V+ T+D  K  +  I+
Sbjct: 162 LITMYRFPQNQFKESSLFVTIAVDVRDTEDKCKDTFAYIA 201


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 489 VNVKSYRFKTFDDVKDYW 506
           V++  Y  K F D+ DYW
Sbjct: 179 VSLALYNNKNFVDLSDYW 196


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 442 GLVQLIYQSAVLSIDHNNTTTFLFY 466
           GL  L+Y SAVL +  ++  + LF+
Sbjct: 357 GLAFLVYPSAVLELPGSSIWSCLFF 381


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 442 GLVQLIYQSAVLSIDHNNTTTFLFY 466
           GL  L+Y SAVL +  ++  + LF+
Sbjct: 410 GLAFLVYPSAVLELPGSSIWSCLFF 434


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,069
Number of Sequences: 429
Number of extensions: 6730
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 7
length of query: 569
length of database: 140,377
effective HSP length: 61
effective length of query: 508
effective length of database: 114,208
effective search space: 58017664
effective search space used: 58017664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)