Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004090-TA|BGIBMGA004090-PA|IPR003593|AAA ATPase,
IPR012099|Midasin, IPR011704|ATPase associated with various cellular
activities, AAA-5, IPR008912|vWA containing CoxE-like,
IPR003006|Immunoglobulin/major histocompatibility complex,
IPR001865|Ribosomal protein S2, IPR002035|von Willebrand factor, type
A
(5145 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 36 0.011
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 33 0.080
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 33 0.080
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 31 0.18
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 30 0.56
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 29 0.99
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 27 5.3
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 27 5.3
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 26 7.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 26 9.2
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 26 9.2
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP57-1
protein.
Length = 544
Score = 35.5 bits (78), Expect = 0.011
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 4570 NPQANPSNNDEAAGEKAENAEIDRGTSDNVETNDEQAKDEDAAPFEQAQEQVGEDKQSMG 4629
N + +N A + A+N D ++N +++ A ++ Q + ++KQ+ G
Sbjct: 416 NTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGN--RQNDNRQNDNKQN-G 472
Query: 4630 RSELDKSDKGHR--GEKQVANRADATQEKKNKHENKPGKTDEER 4671
+ D G+R KQ NR + ++ NK +N + D +R
Sbjct: 473 NRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNK-QNGNRQNDNKR 515
Score = 29.5 bits (63), Expect = 0.75
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 4605 QAKDEDAAPFEQAQEQVGEDKQSMGRSELDKSDKGHRGEKQVANRADATQEKKNKHENKP 4664
Q D A + A Q +++ + ++ ++D KQ NR + K+N +
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQN--DNKQNGNRQND 487
Query: 4665 GKTDEERILGDITERKHKQMQTLNVEREDDNAEEGGDVNDEDESDAD 4711
K + R G+ + +KQ N R++DN G ND + D
Sbjct: 488 NKQNGNRQNGN-KQNDNKQ----NGNRQNDNKRNGNRQNDNQNNQND 529
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 32.7 bits (71), Expect = 0.080
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 2221 VLYTIFSLLTTYFKCSKETFHITYTIIEDIL-KHKKTDSIDLVSKLNKQIKVHFNETVGM 2279
VL+ +FS L T K FH TY I E + +H+K +L+S N + NE+ +
Sbjct: 21 VLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPL 80
Query: 2280 DFMY 2283
+ +
Sbjct: 81 EVKF 84
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 32.7 bits (71), Expect = 0.080
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 2221 VLYTIFSLLTTYFKCSKETFHITYTIIEDIL-KHKKTDSIDLVSKLNKQIKVHFNETVGM 2279
VL+ +FS L T K FH TY I E + +H+K +L+S N + NE+ +
Sbjct: 21 VLFVLFSFLRTRTKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPL 80
Query: 2280 DFMY 2283
+ +
Sbjct: 81 EVKF 84
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 210 KMSNSSTLLQKHLTQINVEPLSRSELCEIVQTLYPSLNTI 249
K+ S T L++H+ ++ P S+ +C I + +Y SLN++
Sbjct: 10 KILTSLTRLRRHIQNVHTRP-SKEPICNICKRVYSSLNSL 48
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 29.9 bits (64), Expect = 0.56
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 796 LEVCIPENYILTPTVRKNLRDIARIVSLGRLPVLLQGDTSVGKTSLITYIAKASGNYCVR 855
L+ +P +R L+D+ +I +G +PV + +T V K ++ A A V+
Sbjct: 232 LDAILPPTRPTDKALRLPLQDVYKIGGIGTVPV-GRVETGVLKPGMVVTFAPAGLTTEVK 290
Query: 856 INNHEHTDLQEYIGSYATDSSGKLVFREGVLVEAMRKGYWIILDELNLAPSDVLEALNRV 915
H LQE + D+ G V + V V+ +R+GY + D N P + +V
Sbjct: 291 SVEMHHEALQEAVPG---DNVGFNV--KNVSVKELRRGY-VAGDSKNNPPKGAADFTAQV 344
Query: 916 L 916
+
Sbjct: 345 I 345
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 29.1 bits (62), Expect = 0.99
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 796 LEVCIPENYILTPTVRKNLRDIARIVSLGRLPVLLQGDTSVGKTSLITYIAKASGNYCVR 855
L+ +P +R L+D+ +I +G +PV + +T V K ++ A A V+
Sbjct: 175 LDAILPPTRPTDKALRLPLQDVYKIGGIGTVPV-GRVETGVLKPGMVVTFAPAGLTTEVK 233
Query: 856 INNHEHTDLQEYIGSYATDSSGKLVFREGVLVEAMRKGY 894
H LQE + D+ G V + V V+ +R+GY
Sbjct: 234 SVEMHHEALQEAVPG---DNVGFNV--KNVSVKELRRGY 267
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 26.6 bits (56), Expect = 5.3
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 796 LEVCIPENYILTPTVRKNLRDIARIVSLGRLPVLLQGDTSVGKTSLITYIAKASGNYCVR 855
L+ +P + +R L+D+ +I +G +PV + +T + K ++ A A+ V+
Sbjct: 232 LDAILPPSRPTDKALRLPLQDVYKIGGIGTVPV-GRVETGILKPGMLVTFAPAALTTEVK 290
Query: 856 INNHEHTDLQEYIGSYATDSSGKLVFREGVLVEAMRKGYWIILDELNLAPSDVLEALNRV 915
H L E + D+ G V + + V+ +R+GY + D N P + +V
Sbjct: 291 SVEMHHEALTEALPG---DNVGFNV--KNISVKELRRGY-VAGDSKNQPPRGAADFTAQV 344
Query: 916 L 916
+
Sbjct: 345 I 345
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 4675 DITERKHKQMQTLNVEREDDNAEEGGDVNDEDESDADA 4712
++TE + + + + + R D +++G D ND DES A
Sbjct: 177 NLTENRLRDINDIGLNRRD--SDDGSDGNDGDESSCRA 212
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 777 QVLGQNFLLFEGHWIPQGTLEVCIPENYI-LTPTVRKNLRDIARIV 821
Q + N+LL EGH I G + P+ Y+ + ++K D+ ++
Sbjct: 134 QTVXNNWLLLEGHSIGIGD-TIADPQTYLEIQKXIKKAKEDVIEVI 178
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1526 ITDLFGTDLPSEDGSFTFKEGSFLSALQNGDWILLD 1561
I D++ T + E SF K F +QNGD+++L+
Sbjct: 355 IKDIYETVIKLEGASFRSKPYRF--GIQNGDYVVLE 388
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 1526 ITDLFGTDLPSEDGSFTFKEGSFLSALQNGDWILLD 1561
I D++ T + E SF K F +QNGD+++L+
Sbjct: 61 IKDIYETVIKLEGASFRSKPYRF--GIQNGDYVVLE 94
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,444
Number of Sequences: 429
Number of extensions: 56848
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 117
Number of HSP's gapped (non-prelim): 18
length of query: 5145
length of database: 140,377
effective HSP length: 73
effective length of query: 5072
effective length of database: 109,060
effective search space: 553152320
effective search space used: 553152320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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