GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004089-TA|BGIBMGA004089-PA|undefined
         (611 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   1.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   3.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   4.2  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   9.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 12/53 (22%), Positives = 28/53 (52%)

Query: 226 TRIIELNEDNSFSTITENHETDSSQKLSRIDELEKENVFPSMTKIIEMENVIS 278
           T+ I+ NE+ +F  + ++ +   +  + R    E  NV+P   + +++ + IS
Sbjct: 608 TKDIKQNEEITFDYMCQSSKNSENSIMQRASMKENLNVYPEFQENVQLCSEIS 660


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 15/82 (18%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 201 RITRIIEFENDKTTKFIEN-ETPQRITRIIELNEDNSFSTITENHETDSSQKLSRIDELE 259
           RI R+   +   T   ++  +   R+ RI  ++  ++  T+     TD    + R+D ++
Sbjct: 389 RIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMDRMD 448

Query: 260 KENVFPSMTKIIEMENVISNER 281
           + +   +M +  +M ++   +R
Sbjct: 449 RVDRMDTMDRTDKMSSMDRMDR 470



 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/74 (17%), Positives = 33/74 (44%)

Query: 211 DKTTKFIENETPQRITRIIELNEDNSFSTITENHETDSSQKLSRIDELEKENVFPSMTKI 270
           D+  +    +T   + R+  ++  +    +      D + K+SRID ++K +    M + 
Sbjct: 469 DRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMDRMDRT 528

Query: 271 IEMENVISNERRIS 284
             M+ +    R+++
Sbjct: 529 NRMDRMNRMNRQMN 542


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 366 PRKKTSVCSIGSSDCDDEVDVIFKSKPKSSQ 396
           P +K S CS  SS   DE DV+     KSS+
Sbjct: 419 PIRKISDCSTTSSLSGDESDVVELQPVKSSK 449


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 129 APILSNGLEYIDSQEPLEDLCVEVNTIKQKSIDTKTTNHDII-SQRITRIIDLNDGLETN 187
           +P+LS+GL Y+D+ E   +   E N ++ +       + DI+ +Q   +++  N  L   
Sbjct: 271 SPLLSHGLYYVDT-EQFSNPQYEENNVQYEG------SQDILNTQSFGKVVSKNGVLFLG 323

Query: 188 NMGH--IEC--EQESPQRITRIIEFENDKTTKFI 217
            +G+  I C  E +  QR +  +  +N++T + I
Sbjct: 324 LVGNSGIACVNEHQVLQRESFDVVAQNEETLQMI 357


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 229 IELNEDNSFSTITENHETDSSQKLSRIDELEKENVFPSMTKIIEMENVISN 279
           I+  E  + S +T N+  +     + + E+E  NV    T I+ M+N   N
Sbjct: 472 IQPQEQLTLSKVTSNYHEEFQSLNNAVGEMEATNV----TNILSMDNTQYN 518


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 219 NETPQRITRIIELNEDNSFSTITENHETDSSQKLSRIDEL 258
           NET       I L    SF       E  +S+KL R+D L
Sbjct: 546 NETYINSGNKISLATSKSFIKANSQTEVSNSKKLDRLDSL 585


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 57  TSVTEDLENDINQQKENSTRRRKMSMQVEVPCVFLSESALQKAKSRNNSRE--EKVTTFE 114
           T +  ++E   N+ K+ +T    +  +        S  + +++ SR+ +RE  +K   +E
Sbjct: 194 TVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYKKKDRRYE 253

Query: 115 NLSAVAKKLLE 125
            L    KKLLE
Sbjct: 254 KLHNEKKKLLE 264


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,706
Number of Sequences: 429
Number of extensions: 8253
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 8
length of query: 611
length of database: 140,377
effective HSP length: 62
effective length of query: 549
effective length of database: 113,779
effective search space: 62464671
effective search space used: 62464671
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)