Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA004085-TA|BGIBMGA004085-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(327 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 40 4e-05
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 35 8e-04
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 31 0.010
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 31 0.014
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 31 0.014
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 29 0.055
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 29 0.055
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 26 0.52
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 25 0.68
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 25 0.68
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 25 0.90
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 25 1.2
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 25 1.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 24 2.1
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 24 2.1
DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein ... 23 2.8
AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein ... 23 2.8
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 22 6.4
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 22 6.4
DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein pr... 22 8.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 8.4
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 22 8.4
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 22 8.4
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 39.5 bits (88), Expect = 4e-05
Identities = 66/306 (21%), Positives = 118/306 (38%), Gaps = 15/306 (4%)
Query: 5 GVLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPYS 64
G++ N V+ R N L LAV+D+ ++I +P IY FPY
Sbjct: 67 GLVGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLISGLPPEIYYIWS-----HFPYV 121
Query: 65 WA-MYLLFHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFIL 123
+ + + A+ A++ + + RYIAI + SH + R I+ ++L
Sbjct: 122 FGEAFCIIQSFAAETSANATVLTITAFTVERYIAICHPFISHTMSKLSRAVKFIIVIWLL 181
Query: 124 PPILCTPTFMVFDIHTKNVTNADGNPDIAYHVDSDYQGTLYQANFWVHGVVIKLLPCSIL 183
L P + F + +N N D A + TL + F + ++ +LP +I+
Sbjct: 182 ALCLAVPQAIQFGVVYEN-KNGSVILDTAR---CSMKWTLIEHAFEISTMLFFVLPMTII 237
Query: 184 TVISIWLIKALYKANQHQKNL-RNY-SACPAAEKMVKRQNKADKRTDRTTKMXXXXXXXX 241
V+ I + L ++ + RN+ S +R++ A + R
Sbjct: 238 IVLYILIAIKLRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQRNVIRMLVAVVVAFFIC 297
Query: 242 XXXXXPQGILGLM---SGLLGWCFFKRCYDLFGELMDFLALLNGAINFILYCTMSRQFRQ 298
Q +L + S Y + + L+ +N +LY MS +FR+
Sbjct: 298 WAPFHAQRLLAVYAQNSKDKPEDVLIIIYTILTYMSGVFYYLSTTVNPLLYNIMSNKFRE 357
Query: 299 TFRQML 304
F+ ML
Sbjct: 358 AFKLML 363
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 35.1 bits (77), Expect = 8e-04
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 5 GVLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPYS 64
G + N + V+ R P N L LAV+D+ +I +PF + V ++ +P+
Sbjct: 47 GFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGLPFEL---SVFWQQ--YPWQ 101
Query: 65 WAMYLL-FHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFIL 123
W + + + ++ S+ ++ +I RY+AI Y H +R +I ++++
Sbjct: 102 WGLGICKLRAYVSETSSYVSVLTIVAFSIERYLAI-YHPLRHYRSGLKRAIRSIFGAWLI 160
Query: 124 PPILCTPTFMVFDIH 138
I P DI+
Sbjct: 161 ALIFAMPFATYVDIN 175
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 31.5 bits (68), Expect = 0.010
Identities = 36/181 (19%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 6 VLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPYSW 65
+ N + I + R N + LAVAD+ V + MPF +Y +++ P
Sbjct: 201 LFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAVY--VLVNGSWSLP--- 255
Query: 66 AMYLLFHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFILPP 125
F++ T+SI ++++I RYIA+ + RR + IL + +
Sbjct: 256 GFVCDFYIAMDVTCSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRRVWLTILLVWAISA 315
Query: 126 ILCTPTFMVFDIHTKNVTNADGNPDIAYHVDSDYQGTLYQANFWVHGVVIKLLPCSILTV 185
+ +P + + D PD ++D+ ++F++ +++ L +I
Sbjct: 316 AIGSPIVLGLN------NTPDRTPDQCLFYNTDFIIYSSLSSFYIPCIIMVFLYYNIFKA 369
Query: 186 I 186
+
Sbjct: 370 L 370
Score = 23.8 bits (49), Expect = 2.1
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 276 FLALLNGAINFILYCTMSRQFRQTFRQML 304
+L +N +N ++Y + +FR+ F +++
Sbjct: 664 WLGYMNSFVNPVIYTVFNPEFRKAFHKLV 692
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 31.1 bits (67), Expect = 0.014
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 272 ELMDFLALLNGAINFILYCTMSRQFRQTFRQMLLQPPLARFLPPTAS 318
+++ +L N A N I+Y + +FR+ F+++L + AR P+ S
Sbjct: 308 QVLTWLGYSNSAFNPIIYSIFNTEFREAFKRILTKGARARGNQPSTS 354
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 31.1 bits (67), Expect = 0.014
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 276 FLALLNGAINFILYCTMSRQFRQTFRQML 304
+L N +N I+Y T++R FR+ FR++L
Sbjct: 414 WLGYCNSLLNPIIYATLNRDFRKPFREIL 442
Score = 24.6 bits (51), Expect = 1.2
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 6/120 (5%)
Query: 25 PINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPYSWAMYLLFHMHFAQILHTASI 84
P N LL LAV+D+ V + MP + + ++ + M L+ + F + TASI
Sbjct: 75 PCNYLLVSLAVSDLCVALLVMPMALLYEI----SGNWSFGTIMCDLW-VSFDVLSCTASI 129
Query: 85 CLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFILPPILCTPTFMVF-DIHTKNVT 143
+++ R+ AI + + T RR + + ++ + P ++ + HT + T
Sbjct: 130 LNLCMISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPPLLIMGNEHTYSET 189
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 29.1 bits (62), Expect = 0.055
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 6 VLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPYSW 65
VL N + I + N + LAVAD+ V + +PF + + F W
Sbjct: 80 VLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPFSATWEVF--KVWIFGDLW 137
Query: 66 -AMYLLFHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFILP 124
+++L + TASI ++++ RY+A+ + + RR + + T +IL
Sbjct: 138 CSIWLAVDVWMC----TASILNLCAISLDRYLAVTRPVSYPQIMSPRRARLLVATVWILS 193
Query: 125 PILCTP 130
++C P
Sbjct: 194 FVICFP 199
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 276 FLALLNGAINFILYCTMSRQFRQTFRQML 304
+L N AIN +Y S+ FR F+ ++
Sbjct: 497 WLGYCNSAINPCIYALFSKDFRFAFKSII 525
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 29.1 bits (62), Expect = 0.055
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 247 PQGILGLMSGLLGWCFFKRCYDLFGELMDFLALLNGAINFILYCTMSRQFRQTFRQML 304
P ++ L SG C ++ + + +L +N +N ++Y SR FR+ F ++L
Sbjct: 350 PFFVVNLWSGFCSQCIWQE--KIVFAAVTWLGWINSGMNPVIYACWSRDFRRAFVRIL 405
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 25.8 bits (54), Expect = 0.52
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 276 FLALLNGAINFILYCTMSRQFRQTFRQML 304
+L +N A+N ++Y + +R+ FR++L
Sbjct: 368 WLGYVNSALNPLIYTIFNLDYRRAFRRLL 396
Score = 25.4 bits (53), Expect = 0.68
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 6 VLANSMNI-AVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPYS 64
VL N++ I +V T R + N + LAVAD+ V I MPF + +L+L + + +
Sbjct: 51 VLGNALVILSVFTYRPLRIVQ-NFFIVSLAVADLAVAILVMPFNV-AYLLLGKWIFGIHL 108
Query: 65 WAMYLLFHMHFAQILHTASICLTLSLAIWRYIAI 98
++L + + TASI ++A+ RY AI
Sbjct: 109 CKLWLTCDV----LCCTASILNLCAIALDRYWAI 138
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 25.4 bits (53), Expect = 0.68
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 4 IGVLANSMNIA-VLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFP 62
+ ++ N++ IA V+T R + + N + LA AD+ V + MP + L P
Sbjct: 50 VTIVGNTLVIAAVITTRRLRSVT-NCFVSSLAAADLLVGLAVMPPAVLLQLTGGTWELGP 108
Query: 63 YSWAMYLLFHMHFAQILHTASICLTLSLAIWRYIAIK----YSDRSHILCTERRCSIAIL 118
++ + +L TASI +++I RY+A+ YS R ++R + I+
Sbjct: 109 MLCDSWVSLDI----LLCTASILSLCAISIDRYLAVTQPLIYSRRRR---SKRLAGLMIV 161
Query: 119 TSFILPPILCTPTFMVFDIHTKNVTNADGNPDIAYHVDSDY 159
++L + +P + TN D +Y++DS Y
Sbjct: 162 AVWVLAGAITSPPLLGC---FPRATNRD-IKKCSYNMDSSY 198
Score = 23.8 bits (49), Expect = 2.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 268 DLFGELMDFLALLNGAINFILYCTMSRQFRQTF 300
D+ + +L +N AIN +Y S FR F
Sbjct: 338 DILMPALTWLGWINSAINPFIYAFYSADFRLAF 370
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 25.4 bits (53), Expect = 0.68
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 4 IGVLANSMNIAVLT-RRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFP 62
I + N+ + ++T R+ ++ + I+ +L LA+AD+ V MP I + + K
Sbjct: 50 ISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTFLMMPLEIGWAITVSWKAG-D 108
Query: 63 YSWAMYLLFHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFI 122
+ F M + +C+++ RY A+ + ++R I + ++I
Sbjct: 109 VMCRIMAFFRMFGLYLSSFVLVCISMD----RYYAV--IKPLQLWDVDKRGKIMLSFAWI 162
Query: 123 LPPILCTPTFMVFDIHT-KNVT 143
+ P +VF + T NVT
Sbjct: 163 GSVVCSLPQTIVFHLETHPNVT 184
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 25.0 bits (52), Expect = 0.90
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 4 IGVLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIY 50
+ +L N + I + P N + LA+ D F+MI+ P IY
Sbjct: 61 LALLGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIK-TPIFIY 106
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 24.6 bits (51), Expect = 1.2
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 268 DLFGELMDFLALLNGA-------INFILYCTMSRQFRQTFRQML 304
D + +L ++L +L+G IN ILY MS ++R F+Q +
Sbjct: 300 DYYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTI 343
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 276 FLALLNGAINFILYCTMSRQFRQTFRQML 304
+L N AIN +Y S+ FR F+ ++
Sbjct: 49 WLGYCNSAINPCIYALFSKDFRFAFKSII 77
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 23.8 bits (49), Expect = 2.1
Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 17/256 (6%)
Query: 4 IGVLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPY 63
+ ++ N I + + P N + LA+ D+ + E MP LV+ ++
Sbjct: 70 MSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFE-MPM-----LVISSFMERMI 123
Query: 64 SWAMYLLFHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFIL 123
W + + F I ++A RY I L +++ I T F +
Sbjct: 124 GWEIGCDVYSVFGSISGMGQAMTNAAIAFDRYRTISCPIDGR-LNSKQAAVIIAFTWFWV 182
Query: 124 PPILCTPTFMVFDIHTKNVTNADGNPDIAYHVDSDYQGTLYQANFWVHGVVIKLLPCSIL 183
P P V+ +T + D + D ++ ++ VI L+
Sbjct: 183 TPFTVLPLLKVWGRYTTEGFLTTCSFDF---LTDDEDTKVFVTCIFIWAYVIPLI----- 234
Query: 184 TVISIWLIKALYKANQHQKNLRNYSACPAAEKMVKRQNKADKRTDRTTKMXXXXXXXXXX 243
I ++ + L H+K LR + + +V Q+K R K+
Sbjct: 235 -FIILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLL 293
Query: 244 XXXPQGILGLMSGLLG 259
P + L+ G+ G
Sbjct: 294 AWTPYATVALI-GVYG 308
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 23.8 bits (49), Expect = 2.1
Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 17/256 (6%)
Query: 4 IGVLANSMNIAVLTRRDMAAAPINRLLKWLAVADVFVMIEYMPFVIYRHLVLPEKLDFPY 63
+ ++ N I + + P N + LA+ D+ + E MP LV+ ++
Sbjct: 70 MSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFE-MPM-----LVISSFMERMI 123
Query: 64 SWAMYLLFHMHFAQILHTASICLTLSLAIWRYIAIKYSDRSHILCTERRCSIAILTSFIL 123
W + + F I ++A RY I L +++ I T F +
Sbjct: 124 GWEIGCDVYSVFGSISGMGQAMTNAAIAFDRYRTISCPIDGR-LNSKQAAVIIAFTWFWV 182
Query: 124 PPILCTPTFMVFDIHTKNVTNADGNPDIAYHVDSDYQGTLYQANFWVHGVVIKLLPCSIL 183
P P V+ +T + D + D ++ ++ VI L+
Sbjct: 183 TPFTVLPLLKVWGRYTTEGFLTTCSFDF---LTDDEDTKVFVTCIFIWAYVIPLI----- 234
Query: 184 TVISIWLIKALYKANQHQKNLRNYSACPAAEKMVKRQNKADKRTDRTTKMXXXXXXXXXX 243
I ++ + L H+K LR + + +V Q+K R K+
Sbjct: 235 -FIILFYSRLLSSIRNHEKMLREQAKKMNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLL 293
Query: 244 XXXPQGILGLMSGLLG 259
P + L+ G+ G
Sbjct: 294 AWTPYATVALI-GVYG 308
>DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein 1
protein.
Length = 116
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 80 HTASICLTLSLAIWRYIAIKYSDR 103
H + L LSL W Y YSD+
Sbjct: 3 HNYIVILILSLLTWTYAEELYSDK 26
>AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein
protein.
Length = 116
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 80 HTASICLTLSLAIWRYIAIKYSDR 103
H + L LSL W Y YSD+
Sbjct: 3 HNYIVILILSLLTWTYAEELYSDK 26
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 92 IWRYIAIKYSDRSHILCT 109
+WR+I + Y +HI T
Sbjct: 58 LWRWIRLTYGQTNHISLT 75
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 22.2 bits (45), Expect = 6.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 92 IWRYIAIKYSDRSHILCT 109
+WR+I + Y +HI T
Sbjct: 96 LWRWIRLTYGQTNHISLT 113
>DQ011227-1|AAY63896.1| 484|Apis mellifera Amt-1-like protein
protein.
Length = 484
Score = 21.8 bits (44), Expect = 8.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 249 GILGLMSGLLGWCFFKRCYD 268
GILG + + G CF R ++
Sbjct: 291 GILGSLVAITGGCFLFRAWE 310
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 8.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 295 QFRQTFRQMLLQPPLARFLPPTAS 318
Q RQ F + LQP + FL AS
Sbjct: 395 QIRQAFAEETLQPGPSMFLKCVAS 418
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 21.8 bits (44), Expect = 8.4
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 127 LCTPTFMVFDIHTKNVTNADGNP-DIAYHVDSD 158
+C P +VFD++T + P DIA + ++
Sbjct: 147 VCPPQLLVFDLNTSQLLKQVKIPHDIAVNTTTE 179
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 21.8 bits (44), Expect = 8.4
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 195 YKANQHQKNLRNYSACPAAEKMVKRQNKADKRTDRTT 231
+K+ H+++ +N E+M +R+ + + +DR T
Sbjct: 51 HKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVT 87
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.329 0.139 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,741
Number of Sequences: 429
Number of extensions: 3634
Number of successful extensions: 85
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 32
length of query: 327
length of database: 140,377
effective HSP length: 58
effective length of query: 269
effective length of database: 115,495
effective search space: 31068155
effective search space used: 31068155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 44 (21.8 bits)
- SilkBase 1999-2023 -