GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004074-TA|BGIBMGA004074-PA|IPR012338|Penicillin-binding
protein, transpeptidase fold
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    26   0.12 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   4.6  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor
          protein.
          Length = 53

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 1  MKTIICV-ALLACVCMAYA-APPPSAVEPAK 29
          MK +I + ALLA +C A+A  P P+  +P +
Sbjct: 1  MKVVIFIFALLATICAAFAYVPLPNVPQPGR 31


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 13  VCMAYAAPPPSAVEPAKADELLQ 35
           VC+A A   PSA +    D+++Q
Sbjct: 167 VCIAAAVKVPSAADDRMFDDIIQ 189


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 13  VCMAYAAPPPSAVEPAKADELLQ 35
           VC+A A   PSA +    D+++Q
Sbjct: 257 VCIAAAVKVPSAADDRMFDDIIQ 279


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 2   KTIICVALLACVCMAYAAPPPSAV 25
           KTI+ V   A + +  A  PP AV
Sbjct: 79  KTILAVNAEADITLKNAGTPPEAV 102


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 2   KTIICVALLACVCMAYAAPPPSAV 25
           KTI+ V   A + +  A  PP AV
Sbjct: 79  KTILAVNAEADITLKNAGTPPEAV 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.133    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393
Number of Sequences: 429
Number of extensions: 368
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)