GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004071-TA|BGIBMGA004071-PA|undefined
         (60 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   3.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.2  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 32 DDMCKSGVSEEMVYDRGAWKEKICCAD 58
          +  C S V   +    G  KE  CC +
Sbjct: 70 EGFCNSQVQPSVASTTGFSKECYCCRE 96


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
          protein precursor protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 32 DDMCKSGVSEEMVYDRGAWKEKICCAD 58
          +  C S V   +    G  KE  CC +
Sbjct: 70 EGFCNSQVQPSVASTTGFSKECYCCRE 96


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 38  GVSEEMVYDRGA 49
           GV+E + Y+RG+
Sbjct: 390 GVNESVSYERGS 401


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 46 DRGAWKEKI 54
          DRG W  KI
Sbjct: 18 DRGMWSSKI 26


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 6/9 (66%), Positives = 6/9 (66%)

Query: 46 DRGAWKEKI 54
          DRG W  KI
Sbjct: 71 DRGMWSSKI 79


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522
Number of Sequences: 429
Number of extensions: 258
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 60
length of database: 140,377
effective HSP length: 40
effective length of query: 20
effective length of database: 123,217
effective search space:  2464340
effective search space used:  2464340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)