GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004069-TA|BGIBMGA004069-PA|undefined
         (526 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   6.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 444 SCISPSVLTLFHVSHRDMFQKR 465
           SCI P +  + H  +R   QKR
Sbjct: 329 SCIDPWIYAINHPRYRQELQKR 350


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 444 SCISPSVLTLFHVSHRDMFQKR 465
           SCI P +  + H  +R   QKR
Sbjct: 329 SCIDPWIYAINHPRYRQELQKR 350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,429
Number of Sequences: 429
Number of extensions: 7737
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 2
length of query: 526
length of database: 140,377
effective HSP length: 61
effective length of query: 465
effective length of database: 114,208
effective search space: 53106720
effective search space used: 53106720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)