GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004060-TA|BGIBMGA004060-PA|undefined
         (988 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   4.0  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   7.0  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   7.0  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   7.0  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   7.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   9.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 559 SHNVSGPGIKPEHEYARHVLDKESHYDTGKNGIPTSSTYVAEESALYKNGKEI 611
           SH  SG   + ++E    V+ + S   T  +G   S TYVA+E+     G  I
Sbjct: 53  SHQESGQPKQVDNETP--VVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHI 103


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 418 RHPKLTTS--SNVYTNSDNIYDQKNTNINQQTLYS 450
           R PK+ +S  +N   N++  Y+  N N N++  Y+
Sbjct: 77  REPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYN 111


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 418 RHPKLTTS--SNVYTNSDNIYDQKNTNINQQTLYS 450
           R PK+ +S  +N   N++  Y+  N N N++  Y+
Sbjct: 77  REPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYN 111


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 418 RHPKLTTS--SNVYTNSDNIYDQKNTNINQQTLYS 450
           R PK+ +S  +N   N++  Y+  N N N++  Y+
Sbjct: 77  REPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYN 111


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 418 RHPKLTTS--SNVYTNSDNIYDQKNTNINQQTLYS 450
           R PK+ +S  +N   N++  Y+  N N N++  Y+
Sbjct: 77  REPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYN 111


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 417 PRHPKLTTSSNVYTNSDNIYDQKNTNINQ--QTLYSDQNMTT 456
           P  P+LT S+++   SDN      T+ N+   TL  D  M T
Sbjct: 213 PPAPRLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLT 254


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 853 IEKNRSQVEVTRYITENGVTRKIT 876
           I++N  QV V RY   NG T K+T
Sbjct: 365 IQENGDQVSVGRYFYPNG-TEKMT 387


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.125    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,637
Number of Sequences: 429
Number of extensions: 9956
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 8
length of query: 988
length of database: 140,377
effective HSP length: 64
effective length of query: 924
effective length of database: 112,921
effective search space: 104339004
effective search space used: 104339004
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 48 (23.4 bits)