GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004058-TA|BGIBMGA004058-PA|undefined
         (376 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   9.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 254 VTTWLYFS--LYTPLVYHTFLSEFFSVSQPSIMFSYKAQMDEP 294
           V TWL +S   + P++Y  F +EF    +  +    +A+ ++P
Sbjct: 309 VLTWLGYSNSAFNPIIYSIFNTEFREAFKRILTKGARARGNQP 351


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 319 YQQSNSVYDSTLFEAGGTTPMNPAYSASLQSPDSIASA 356
           +++ +S  DS + E+G   P  PA S++  +P S+ S+
Sbjct: 571 FRKLDSPSDSGI-ESGTEKPDKPASSSASSAPTSVCSS 607



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 324 SVYDSTLFEAGGTTPMNPAYSASLQSPDSIASAQSIDTGAPISGFHSQNIP 374
           S  D TL EA   +P+    S        +AS       AP SG H+ + P
Sbjct: 476 SASDVTLDEAV-KSPLGSVSSTESTCSGEVASLTEYHHVAPPSGHHASSAP 525


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 296 DDDQVSLPHQQSFSSLKTDSD 316
           DD++ +  HQ++  SL TD D
Sbjct: 111 DDERPNSIHQRASFSLNTDGD 131


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 252 VDVTTWLYFSLYTPLVYHTFLSEFFSVS 279
           +++T   +++LYT +  H   SEF  +S
Sbjct: 765 MELTEAEHYALYTAMAPHATASEFDEMS 792


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,431
Number of Sequences: 429
Number of extensions: 3826
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 376
length of database: 140,377
effective HSP length: 59
effective length of query: 317
effective length of database: 115,066
effective search space: 36475922
effective search space used: 36475922
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)