GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004057-TA|BGIBMGA004057-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site, IPR004117|Olfactory
receptor, Drosophila
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   2.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   3.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   3.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   6.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   6.0  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 37 DVLNGIFEKNDADRDPVFIDRKLK 60
          DV  GIF+KND ++   ++D  LK
Sbjct: 46 DVKKGIFDKND-EKLACYVDCMLK 68


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 117 GIMPLFIYCFGGELLI-TAGMDMSTA 141
           G++PL ++ +GG  +  TA +D+  A
Sbjct: 156 GLLPLLVWIYGGGFMSGTATLDVYNA 181


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 117 GIMPLFIYCFGGELLI-TAGMDMSTA 141
           G++PL ++ +GG  +  TA +D+  A
Sbjct: 156 GLLPLLVWIYGGGFMSGTATLDVYNA 181


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 73 HNEIKNLYKII 83
          HN I+N++KII
Sbjct: 56 HNHIQNIFKII 66


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)

Query: 73 HNEIKNLYKII 83
          HN I+N++KII
Sbjct: 39 HNHIQNIFKII 49


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.331    0.143    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,737
Number of Sequences: 429
Number of extensions: 1961
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 42 (21.0 bits)