GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004056-TA|BGIBMGA004056-PA|undefined
         (243 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/57 (22%), Positives = 19/57 (33%)

Query: 142 PILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLI 198
           P+L S     SP    K T     ++         + K  +      RKA    G+I
Sbjct: 321 PVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGII 377


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)

Query: 91  MFDEMYRVFEKVQKKQINMTKFPKYCVVLIMAA 123
           + D M+   E+V   +++  +   +C V+++AA
Sbjct: 316 LMDSMFDFAERVNSLRLSDAELGLFCSVVVIAA 348


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 51  FHFLDAPKEALQCFEEPANDGFFDQQVSYQILLD 84
           F FL   K      E P N G +DQ ++ + L D
Sbjct: 202 FGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRD 235


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 51  FHFLDAPKEALQCFEEPANDGFFDQQVSYQILLD 84
           F FL   K      E P N G +DQ ++ + L D
Sbjct: 202 FGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRD 235


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,785
Number of Sequences: 429
Number of extensions: 2457
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 243
length of database: 140,377
effective HSP length: 56
effective length of query: 187
effective length of database: 116,353
effective search space: 21758011
effective search space used: 21758011
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 43 (21.4 bits)