GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004052-TA|BGIBMGA004052-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
         (100 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   5.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    19   8.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 54  YQGGYFKAHMKFPPDYPY 71
           + G  F+  +KF P YP+
Sbjct: 305 FDGRLFEFPIKFVPSYPF 322


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 26   VEGFRVKLLGEDNL 39
            VEGF  KL+ ED +
Sbjct: 1053 VEGFETKLVLEDGI 1066


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 70  PYSPPSIRFLTKVWHPNV 87
           P S   +  +T +WH N+
Sbjct: 394 PLSSTGLAQVTGIWHSNL 411


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,663
Number of Sequences: 429
Number of extensions: 1604
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 140,377
effective HSP length: 49
effective length of query: 51
effective length of database: 119,356
effective search space:  6087156
effective search space used:  6087156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)