GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004039-TA|BGIBMGA004039-PA|undefined
         (375 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       26   0.46 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.2  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   7.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   7.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   7.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   7.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   9.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 0.46
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 4/35 (11%)

Query: 226 KTFSLRSLFTKDAEQDEAPQQETEYIPLDVPKKKK 260
           KTF+ R    +D +++EA + + +YIP ++P  +K
Sbjct: 133 KTFAAR----EDNDEEEAQKPKEQYIPPELPNDEK 163


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 6   PNKKVKFSDEDSSILVND 23
           PNKKV+ S+E S + V D
Sbjct: 261 PNKKVRISNEMSKVKVID 278


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLYNEKEKFLEEKTS 35


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLYNEKEKFLEEKTS 35


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLYNEKEKFLEEKTS 35


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLYNEKEKFLEEKTS 35


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
          determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2  YDKLPNKKVKFSDEDSS 18
          Y+KL N+K KF +E +S
Sbjct: 19 YEKLHNEKEKFLEERTS 35


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2   YDKLPNKKVKFSDEDSS 18
           Y+KL N+K KF +E +S
Sbjct: 252 YEKLHNEKEKFLEERTS 268


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2   YDKLPNKKVKFSDEDSS 18
           Y+KL N+K KF +E +S
Sbjct: 252 YEKLHNEKEKFLEERTS 268


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 2   YDKLPNKKVKFSDEDSS 18
           Y+KL N+K KF +E +S
Sbjct: 252 YEKLHNEKEKFLEERTS 268


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 297 TEAKAVWKENLFFTKQDQ 314
           T+A  VW  +LFF+ + +
Sbjct: 110 TDASRVWMPDLFFSNEKE 127


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 297 TEAKAVWKENLFFTKQDQ 314
           T+A  VW  +LFF+ + +
Sbjct: 110 TDASRVWMPDLFFSNEKE 127


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.132    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,768
Number of Sequences: 429
Number of extensions: 4459
Number of successful extensions: 29
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 27
length of query: 375
length of database: 140,377
effective HSP length: 59
effective length of query: 316
effective length of database: 115,066
effective search space: 36360856
effective search space used: 36360856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)