GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004038-TA|BGIBMGA004038-PA|IPR001715|Calponin-like
actin-binding, IPR004953|EB1
         (350 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.98 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    25   1.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   5.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 322 DILYATEDGFAPPEEIDGDNPHPP 345
           +I  A E   A PEE DG  P PP
Sbjct: 112 EIQRALEWNAAHPEEDDGGQPRPP 135


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 269 VVDELNHQINELKATVDGLEKERDFYFGKLRDIEVI 304
           V+ ++N Q++EL   +  LE+ RD  +  +    VI
Sbjct: 292 VLKDINRQVDELNFDIQDLERWRDRIYEAIHTGSVI 327


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 47  FMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAG 81
           F+D++   S+P+  I    N   ++ ++F+IL AG
Sbjct: 170 FLDLI--SSIPLDYIFLIFNQFQDFSESFQILHAG 202


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 47  FMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAG 81
           F+D++   S+P+  I    N   ++ ++F+IL AG
Sbjct: 170 FLDLI--SSIPLDYIFLIFNQFQDFSESFQILHAG 202


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 47  FMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAG 81
           F+D++   S+P+  I    N   ++ ++F+IL AG
Sbjct: 170 FLDLI--SSIPLDYIFLIFNQFQDFSESFQILHAG 202


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,267
Number of Sequences: 429
Number of extensions: 4128
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 350
length of database: 140,377
effective HSP length: 58
effective length of query: 292
effective length of database: 115,495
effective search space: 33724540
effective search space used: 33724540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)