GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004037-TA|BGIBMGA004037-PA|undefined
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.9  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 52  NKYGPGANNTTGHRRQEVLINAKDLNLPGPAYGGSW 87
           N Y    NN      +  +IN + + +P P Y G++
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 52  NKYGPGANNTTGHRRQEVLINAKDLNLPGPAYGGSW 87
           N Y    NN      +  +IN + + +P P Y G++
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 58   ANNTTGHRRQEVLINAKDLNLPGPAYGG 85
            AN   G  + +    +++ N P PA GG
Sbjct: 1003 ANAQQGQAQAQAKPQSQEANKPKPATGG 1030


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,262
Number of Sequences: 429
Number of extensions: 2127
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)