GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004036-TA|BGIBMGA004036-PA|IPR000629|ATP-dependent
helicase, DEAD-box, IPR014021|Helicase superfamily 1 and 2
ATP-binding, IPR001650|Helicase, C-terminal, IPR014014|DEAD-box RNA
helicase Q motif, IPR011545|DEAD/DEAH box helicase, N-terminal,
IPR014001|DEAD-like helicases, N-terminal
         (617 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      611   e-177
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  611 bits (1508), Expect = e-177
 Identities = 309/494 (62%), Positives = 377/494 (76%), Gaps = 15/494 (3%)

Query: 137 EDNEIGENGETKKPVTYVPPEPTNDETEIFSSTISSGINFDKFDHIAVKVSGENPPRPIE 196
           EDN+  E  + K+   Y+PPE  NDE  +F + +  GINFDK+D+I V VSG+N P+PIE
Sbjct: 139 EDNDEEEAQKPKEQ--YIPPELPNDEKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIE 196

Query: 197 SFETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIIN 256
           SFE A LR  VLDN+ K+GY+KPTP+QK+A+PIIM+GRDLM CAQTGSGKTAAF VPIIN
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 257 MLLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFSYGSVLKVAVAYGGTAVRHQ 316
            LL+   DL+  +   +PQV+IVSPTRELT+QI+ +  KFS  S+LK  VAYGGT+V HQ
Sbjct: 257 TLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQ 316

Query: 317 GDNIARGCHILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHPT 376
              ++ GCHILVATPGRL DFVE+ RV F SV+F+VLDEADRMLDMGF+PSIEKM+ H T
Sbjct: 317 RGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHET 376

Query: 377 MVETTKRQTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEKRN 436
           MV   +RQTLMFSATFP+++QHLA RFLNNYLF+AVGIVGGA +DVEQ F EV + +K++
Sbjct: 377 MVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKD 436

Query: 437 SLKQLIE-ENDGKRI---LVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQN 492
            LK+++E END   +   LVFVE K+ ADFIA  LSE    T+SIHGDR+QR+REEAL +
Sbjct: 437 LLKEILERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALAD 496

Query: 493 FKSGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYD 552
           FKSG+  ILVATAVAARGLDIKNV  V+NYDLPK IDEYVHRIGRTGRVGNRG+A SF+D
Sbjct: 497 FKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFD 556

Query: 553 SDQDLALVADLSKILRQADQSVPDFLKGG-GTATF---KG-NKYGGSDVRN---FNNANT 604
            ++D  L  DL +IL+QA+QSVPD++ GG     F   +G +K+GG DVR    F    T
Sbjct: 557 PEEDAPLRGDLVRILKQANQSVPDWMMGGNANRNFMPGRGISKFGGEDVRESEAFAEEYT 616

Query: 605 -AVVDQGQEPEEEW 617
                  QEPEEEW
Sbjct: 617 EEAYSVAQEPEEEW 630


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 407 YLFVAVGIVGGASTDVEQIFIEVTKYEKR--NSLKQLIEENDGKRILVFVETKR 458
           YL + + +V G  +D+++     +KY K+     K  IE+ +      F E ++
Sbjct: 14  YLILQIALVYGEISDIDEFREMTSKYRKKCIGETKTTIEDVEATEYGEFPEDEK 67


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 31   PPPPLQNHD 39
            PPPP +NHD
Sbjct: 1860 PPPPPRNHD 1868


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,133
Number of Sequences: 429
Number of extensions: 6949
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 617
length of database: 140,377
effective HSP length: 62
effective length of query: 555
effective length of database: 113,779
effective search space: 63147345
effective search space used: 63147345
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)