GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004034-TA|BGIBMGA004034-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (282 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    31   0.015
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    30   0.020
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    28   0.081
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.25 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.76 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   1.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.7  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 0.015
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 170 NNKAIKRQYKADRRTNRTTKMLVAVLLLFLVTELPQXXXXXXXXXXXRCFFKRCYDLFGE 229
           NN ++ R+     +  +  K L  V+ +F++  LP            +C ++    +   
Sbjct: 316 NNFSLSRKLAKFAKEKKAAKTLGIVMGVFIICWLPFFVVNLWSGFCSQCIWQE--KIVFA 373

Query: 230 LMDALALLNGAINFVLYCSMSRQFRMTFGQMM 261
            +  L  +N  +N V+Y   SR FR  F +++
Sbjct: 374 AVTWLGWINSGMNPVIYACWSRDFRRAFVRIL 405


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 174 IKRQYKADRRTNRTTKMLVAVLLLFLVTELPQXXXXXXXXXXXRCFFKRC-YDLFGELMD 232
           IK Q K  R   +  K L  ++  F++  LP            R F + C +     ++ 
Sbjct: 442 IKAQVKRFRMETKAAKTLGIIVGGFILCWLP-----FFTMYLVRAFCRNCIHPTVFSVLF 496

Query: 233 ALALLNGAINFVLYCSMSRQFRMTFGQMMWRAHLHRWSPPQASHSDG 279
            L   N AIN  +Y   S+ FR  F  ++ +    R +      SDG
Sbjct: 497 WLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLRRGSDG 543



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)

Query: 162 RVYNACPSNNKAIKRQYKADRRTNRTTKM 190
           R+YNA  S  KAI + +    RT +++KM
Sbjct: 269 RIYNAAVSTTKAINQGF----RTTKSSKM 293


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 28.3 bits (60), Expect = 0.081
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 160 KIRVYNACPSNNKAIKRQYKADRRTNRTTKMLVAVLLLFLVTELPQXXXXXXXXXXXRCF 219
           +  +Y A  ++ K  KR+  + ++  + TK L  VL +FL+  LP            +  
Sbjct: 592 RFTIYKANKASKK--KREKSSAKKERKATKTLAIVLGVFLICWLPFFTCNIMDAICTKLT 649

Query: 220 FKRCYDLFGELMDA-LALLNGAINFVLYCSMSRQFRMTFGQMM 261
                 +   ++ + L  +N  +N V+Y   + +FR  F +++
Sbjct: 650 ADCQPGVTAFIVTSWLGYMNSFVNPVIYTVFNPEFRKAFHKLV 692


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 217 RCFFKRC-YDLFGELMDALALLNGAINFVLYCSMSRQFRMTFGQMMWRAHLHRWSPPQAS 275
           R F + C +     ++  L   N AIN  +Y   S+ FR  F  ++ +    R +     
Sbjct: 32  RAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFCKRRTNTLRR 91

Query: 276 HSDG 279
            SDG
Sbjct: 92  GSDG 95


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 8/29 (27%), Positives = 18/29 (62%)

Query: 234 LALLNGAINFVLYCSMSRQFRMTFGQMMW 262
           L   N  +N ++Y +++R FR  F ++++
Sbjct: 415 LGYCNSLLNPIIYATLNRDFRKPFREILY 443


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 44/213 (20%), Positives = 82/213 (38%), Gaps = 26/213 (12%)

Query: 83  VAWTLQGQGVFDIHTAVVLEPTGPMILYHVDSDEEGGLYQINFW-VHAVLIKLLPCCLLT 141
           V W L G   F   +  +     P++L   DS EE     ++    +AV+   +   +  
Sbjct: 148 VVWLLAGLISFVPISLGLHRANEPVVLD--DSKEEHPTCALDLTPTYAVVSSSISFYVPC 205

Query: 142 VISLWLIREVYS-ANQHQKKIRVYNACPSNN--KAIKRQYKADRRTNRTTK--------- 189
           ++ L +   +Y  A +H K IR     P  +  K+  R+  A +     TK         
Sbjct: 206 IVMLGIYCRLYCYAQKHVKSIRAVTKLPDTSMAKSFVRKVHATKPPKPQTKTKPTSPYHV 265

Query: 190 ------MLVAVLL-LFLVTELPQXXXXXXXXXXXRCFFKRCYDLFGELMDALALLNGAIN 242
                 + V V++ +FL+  +P             C   R +    +++  L   N A N
Sbjct: 266 SDHKAAITVGVIMGVFLICWVPFFCVNIVTSYCKTCISGRAF----QVLTWLGYSNSAFN 321

Query: 243 FVLYCSMSRQFRMTFGQMMWRAHLHRWSPPQAS 275
            ++Y   + +FR  F +++ +    R + P  S
Sbjct: 322 PIIYSIFNTEFREAFKRILTKGARARGNQPSTS 354


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 225 DLFGELMDALALLNGAINFVLYCSMSRQFRMTFGQMMWR 263
           D+    +  L  +N AIN  +Y   S  FR+ F ++  R
Sbjct: 338 DILMPALTWLGWINSAINPFIYAFYSADFRLAFWRLTCR 376


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 228 GELMDALALLNGAINFVLYCSMSRQFRMTFGQMMWR 263
           G +   +A L+GA+   + CS    F  +F    W+
Sbjct: 54  GAITGLVASLDGALKLRIRCSDVHHFESSFNAQSWQ 89


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 8/174 (4%)

Query: 95  IHTAVVLE-PTGPMILYHVDSDEEGGLYQINFWVHAVLIKLLPCCLLTVISLWLIREVYS 153
           I   VV E   G +IL       +  L +  F +  +L  +LP  ++ V+ + +  ++  
Sbjct: 191 IQFGVVYENKNGSVILDTARCSMKWTLIEHAFEISTMLFFVLPMTIIIVLYILIAIKLRR 250

Query: 154 ANQHQKKIRVYNACPSNNKAIKRQYKADRRTNRTTKMLVAVLLLFLVTELPQXXXXXXXX 213
           +      +   +     N     + K+  + N   +MLVAV++ F +   P         
Sbjct: 251 SRMLTATVNRNHLSGGTNHWDSGRRKSAAQRN-VIRMLVAVVVAFFICWAPFHAQRLLAV 309

Query: 214 XXXRCFFKR------CYDLFGELMDALALLNGAINFVLYCSMSRQFRMTFGQMM 261
                  K        Y +   +      L+  +N +LY  MS +FR  F  M+
Sbjct: 310 YAQNSKDKPEDVLIIIYTILTYMSGVFYYLSTTVNPLLYNIMSNKFREAFKLML 363


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 40 HTASICLTLSLAVWRYVAINLKDYYSNYSQTEFDSQQCGRNRY 82
          H   + L LSL  W Y      D Y   +  E  +    RN+Y
Sbjct: 3  HNYIVILILSLLTWTYAEELYSDKYDYVNIDEILANDRLRNQY 45


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)

Query: 40 HTASICLTLSLAVWRYVAINLKDYYSNYSQTEFDSQQCGRNRY 82
          H   + L LSL  W Y      D Y   +  E  +    RN+Y
Sbjct: 3  HNYIVILILSLLTWTYAEELYSDKYDYVNIDEILANDRLRNQY 45


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)

Query: 158 QKKIR--VYNACPSNNKAIK 175
           QKK+R  +   CP NNK +K
Sbjct: 327 QKKLREEINTFCPKNNKELK 346


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 120 LYQINFWVHAVLIKLLPCCLLTVISLWL 147
           L++  F  + + I  +PCC+L ++S W+
Sbjct: 236 LFKREFSYYLIQI-YIPCCMLVIVS-WV 261


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)

Query: 120 LYQINFWVHAVLIKLLPCCLLTVISLWL 147
           L++  F  + + I  +PCC+L ++S W+
Sbjct: 236 LFKREFSYYLIQI-YIPCCMLVIVS-WV 261


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 121 YQINFWVHAVLIKLLPCCLLTVISLWLIREVYSANQHQKKIRVYNACPSNNKAIKRQ 177
           ++++ WV  V +  LPC L   +S    +E   A + QK   V  A  S+     RQ
Sbjct: 326 HEMSEWVKVVFLYWLPCILR--MSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQ 380


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 172 KAIKRQYKADRRTNRTTKMLVAVLLLFLVTELP 204
           K  KR   + RR  + TKM+  ++  FL+   P
Sbjct: 94  KVRKRAGASGRREAKITKMVALMITAFLLAWSP 126


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 81  RYVAWTLQGQGVFDI 95
           RY+ WT + +GVF +
Sbjct: 476 RYIKWTNRERGVFKL 490


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.329    0.139    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,296
Number of Sequences: 429
Number of extensions: 3123
Number of successful extensions: 25
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 19
length of query: 282
length of database: 140,377
effective HSP length: 57
effective length of query: 225
effective length of database: 115,924
effective search space: 26082900
effective search space used: 26082900
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)