GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004033-TA|BGIBMGA004033-PA|undefined
         (120 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   6.7  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    20   6.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   6.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 10  TQTLTNLFEEMLLETEASNHNESNLDL 36
           T+  T + +++  ETE    N+  LDL
Sbjct: 306 TELSTGMNDDIPPETEEEEENDKKLDL 332


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 54  PLDFGTLIRLVDGFRNKLN 72
           P D+G  +  +DG++N L+
Sbjct: 151 PEDYGKRVLSMDGYQNILD 169


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 54  PLDFGTLIRLVDGFRNKLN 72
           P D+G  +  +DG++N L+
Sbjct: 151 PEDYGKRVLSMDGYQNILD 169


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 54  PLDFGTLIRLVDGFRNKLN 72
           P D+G  +  +DG++N L+
Sbjct: 151 PEDYGKRVLSMDGYQNILD 169


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,722
Number of Sequences: 429
Number of extensions: 1251
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 120
length of database: 140,377
effective HSP length: 51
effective length of query: 69
effective length of database: 118,498
effective search space:  8176362
effective search space used:  8176362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)