GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004032-TA|BGIBMGA004032-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (192 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    33   0.002
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    31   0.005
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    29   0.029
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.15 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    26   0.20 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.36 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.62 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 32.7 bits (71), Expect = 0.002
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 84  NSIHGYVSLLVCLFGSLANAFNVAVLTRRDLAVAPINRLLKWLAVADVFVMIEYVPFAIY 143
           NS    + ++V       N   +  + R        N  +  LAVAD+ V +  +PFA+ 
Sbjct: 186 NSWWALILVIVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMPFAV- 244

Query: 144 RYLLLPGQEDRPYSWAAYMLFHMHFTQIFHTASILLTLSLAVWRYLAI 191
            Y+L+ G    P        F++       T+SI   +++++ RY+A+
Sbjct: 245 -YVLVNGSWSLP---GFVCDFYIAMDVTCSTSSIFNLVAISIDRYIAV 288


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 0.005
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 6/101 (5%)

Query: 92  LLVCLFGSLANAFNVAVLTRRDLAVAPINRLLKWLAVADVFVMIEYVPFAIYRYLLLPGQ 151
           +++ + G + N     V+ R      P N  L  LAV+D+  +I  +PF +  +      
Sbjct: 41  VVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGLPFELSVF-----W 95

Query: 152 EDRPYSWA-AYMLFHMHFTQIFHTASILLTLSLAVWRYLAI 191
           +  P+ W         + ++     S+L  ++ ++ RYLAI
Sbjct: 96  QQYPWQWGLGICKLRAYVSETSSYVSVLTIVAFSIERYLAI 136


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 0.029
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 12/124 (9%)

Query: 69  TEYCAGEFRDLIIAYNSIHGYVSLLVCLFGSLANAFNVA-VLTRRDLAVAPINRLLKWLA 127
           TEY    + DL++A     G  ++L+ +   + N   +A V+T R L  +  N  +  LA
Sbjct: 28  TEYYLPNWTDLVLA-----GLFTMLI-IVTIVGNTLVIAAVITTRRLR-SVTNCFVSSLA 80

Query: 128 VADVFVMIEYVPFAIYRYLLLPGQEDRPYSWAAYMLFHMHFTQIFHTASILLTLSLAVWR 187
            AD+ V +  +P A+   L     E  P    +++   +    +  TASIL   ++++ R
Sbjct: 81  AADLLVGLAVMPPAVLLQLTGGTWELGPMLCDSWVSLDI----LLCTASILSLCAISIDR 136

Query: 188 YLAI 191
           YLA+
Sbjct: 137 YLAV 140


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 85  SIHGYVSLLVCLFGSLA---NAFNVAVLTRRDLAVAPINRLLKWLAVADVFVMIEYVPFA 141
           S+H  ++LL  LF  LA   N   + +         P N  +  LA+ D F+MI+  P  
Sbjct: 46  SLHYLLALLYILFTFLALLGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIK-TPIF 104

Query: 142 IY 143
           IY
Sbjct: 105 IY 106


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 100 LANAFNV-AVLTRRDLAVAPINRLLKWLAVADVFVMIEYVPFAIYRYLLL 148
           L NA  + +V T R L +   N  +  LAVAD+ V I  +PF +  YLLL
Sbjct: 52  LGNALVILSVFTYRPLRIVQ-NFFIVSLAVADLAVAILVMPFNV-AYLLL 99


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 80  IIAYNS-IHGYVSLLVCLFGSLANAFNVAVLTRRDLAVAPINRLLKWLAVADVFVMIEYV 138
           I AY S +  YVS+L  +  S+     +     R   ++ + R ++++  A +  +I  +
Sbjct: 116 IRAYVSEMSSYVSVLTIVAFSMERYLAICH-PLRVYTISGLKRPIRFILAAWLIALISAI 174

Query: 139 PFAIY 143
           PFAIY
Sbjct: 175 PFAIY 179


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 106 VAVLTRRDLAVAPINRLLKWLAVADVFVMIEYVPFAIYRYLLLPGQEDRPYSWAAYML-F 164
           VAV   R L   P N LL  LAV+D+ V +  +P A+   +         +S+   M   
Sbjct: 64  VAVFLVRKLR-RPCNYLLVSLAVSDLCVALLVMPMALLYEI------SGNWSFGTIMCDL 116

Query: 165 HMHFTQIFHTASILLTLSLAVWRYLAI 191
            + F  +  TASIL    ++V R+ AI
Sbjct: 117 WVSFDVLSCTASILNLCMISVDRFCAI 143


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)

Query: 48  LKVLEDWRNRFNI 60
           LK LEDW N  NI
Sbjct: 378 LKSLEDWENEMNI 390


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 165 HMHFTQIFHTASILLTLSLAVWRY 188
           ++ FT I +T SIL+T+ +  W +
Sbjct: 299 YLLFTFIMNTVSILVTVIIINWNF 322


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 93  LVCLFGSLANAFNVAVLT-RRDLAVAPINRLLKWLAVADVFVMIEYVPFAI 142
           ++ +  ++ N   + ++T R+ ++ + I+ +L  LA+AD+ V    +P  I
Sbjct: 46  VLMIISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTFLMMPLEI 96


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 44  IGQVLKVLEDWRNRFNITVVKECDGTEY-CAGEFR 77
           IGQ + V  D  +  NI+ V   DG EY C  E R
Sbjct: 470 IGQYVTVHGDVISHVNISHVMVEDGGEYSCMAENR 504


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 44  IGQVLKVLEDWRNRFNITVVKECDGTEY-CAGEFR 77
           IGQ + V  D  +  NI+ V   DG EY C  E R
Sbjct: 470 IGQYVTVHGDVISHVNISHVMVEDGGEYSCMAENR 504


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/26 (23%), Positives = 15/26 (57%)

Query: 31 NSLLNHGGNYTTNIGQVLKVLEDWRN 56
          ++ +NH      N+   +KV+ +W++
Sbjct: 20 SAAVNHQRKSANNLAHSMKVIYEWKH 45


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 17  LSHISGNLFEDASINSLLNHGGNYTTNIGQVLKVLEDWRNRFNITVVKECDGTEYC 72
           LS I+   F    +   +NHG      IG      + W N  N+    E  G   C
Sbjct: 881 LSSINEQSFNHFVLKMGINHGPVTAGVIGARKPHYDIWGNTVNVASRMESTGKVGC 936


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,581
Number of Sequences: 429
Number of extensions: 2286
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 14
length of query: 192
length of database: 140,377
effective HSP length: 54
effective length of query: 138
effective length of database: 117,211
effective search space: 16175118
effective search space used: 16175118
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)