GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004031-TA|BGIBMGA004031-PA|undefined
         (316 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   0.65 
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    24   1.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   6.1  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    22   6.1  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    22   8.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.1  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 286 FDLADMDTMFENESESQ 302
           FDL+D+ +M+E+ SE Q
Sbjct: 32  FDLSDLKSMYESNSEEQ 48


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 286 FDLADMDTMFENESESQ 302
           FDL+D+ +M+E  SE Q
Sbjct: 32  FDLSDLKSMYEANSEEQ 48


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 285 NFDLADMDTMFENESE 300
           N +L D+D++ E+ESE
Sbjct: 32  NLNLDDIDSLLEDESE 47


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 228 NVDRVLRKLIREDPSLGDFLKTEIDDHILLTNNVTFHHKCL----QNADVPLKSSKKTCS 283
           N + V+ K    + S   F + EI + +  TN +T H   L    + ++   K+ KK   
Sbjct: 153 NPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAI 212

Query: 284 GNFDLADMDTMFENESESQPTTESQRIASG 313
            +  L      F+  S      E  R   G
Sbjct: 213 SSNSLRSRSRSFQRTSSCHSRYEDSRHEDG 242


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 228 NVDRVLRKLIREDPSLGDFLKTEIDDHILLTNNVTFHHKCL----QNADVPLKSSKKTCS 283
           N + V+ K    + S   F + EI + +  TN +T H   L    + ++   K+ KK   
Sbjct: 153 NPEDVMLKRRTGEGSKPIFEREEIKNILNKTNEITEHRTVLAVNIEKSENETKTCKKYAI 212

Query: 284 GNFDLADMDTMFENESESQPTTESQR 309
            +  L      F+  S      E  R
Sbjct: 213 SSNSLGSRSRSFQRTSSCHSRYEDSR 238


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 48  GQLLLNQIVSLCEIYEKLQSNILFLYSP 75
           G+L+++  + L EI  KL   I+  YSP
Sbjct: 261 GKLIVDFFMILNEIIMKLVGIIIMWYSP 288


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,851
Number of Sequences: 429
Number of extensions: 3746
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 6
length of query: 316
length of database: 140,377
effective HSP length: 58
effective length of query: 258
effective length of database: 115,495
effective search space: 29797710
effective search space used: 29797710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)