GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004030-TA|BGIBMGA004030-PA|IPR000558|Histone H2B,
IPR007125|Histone core, IPR009072|Histone-fold
         (67 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   0.72 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   3.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   3.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    19   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   6.7  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
          protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 0.72
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 8  EAGRLVAHGKKNTLGSREIQS---AVKLLVPGEL-ATHANSEGMK 48
          EA RLVA G  N      + S    ++    G   A H N+EGMK
Sbjct: 20 EAWRLVADGILNAKDVDAVMSEGLGMRYAFLGAFEAAHLNAEGMK 64


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 22   GSREIQSAVKLLVPGELATHANSEGMKAISMY 53
            G   + S +KL+ PG++ +     G++  +++
Sbjct: 1017 GKTLLASQIKLVSPGQIKSLLTGHGLQGQTIF 1048


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 31  KLLVPGELATHANSEGMKAISMYHL 55
           ++LVPG     A    ++  + YHL
Sbjct: 926 RVLVPGSQQNVAGVFNLRPATTYHL 950


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
          protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 1  MLEKIAVEAGRLVAHGKKNTLGSREIQ 27
          M+E+I+ E  ++   G  NT  + + Q
Sbjct: 1  MMEEISTENAKVSDSGYSNTCSNSQSQ 27


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 1  MLEKIAVEAGRLVAHGKKNTLGSREIQ 27
          M+E+I+ E  ++   G  NT  + + Q
Sbjct: 1  MMEEISTENAKVSDSGYSNTCSNSQSQ 27


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.0 bits (37), Expect = 5.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 22  GSREIQSAVKLLVPG 36
           G  EI  A+K L PG
Sbjct: 658 GRTEIDVAIKTLKPG 672


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.6 bits (36), Expect = 6.7
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 14  AHGKKNTLGSREIQSAVKLLVPGELAT 40
           A G +      E+Q+A++ +  G+L T
Sbjct: 584 AGGGRRAYTEEELQAALRDIQSGKLGT 610


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471
Number of Sequences: 429
Number of extensions: 266
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 67
length of database: 140,377
effective HSP length: 45
effective length of query: 22
effective length of database: 121,072
effective search space:  2663584
effective search space used:  2663584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)