GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004029-TA|BGIBMGA004029-PA|IPR001849|Pleckstrin-like,
IPR000306|Zinc finger, FYVE-type, IPR011011|Zinc finger, FYVE/PHD-type
         (268 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            29   0.044
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.54 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    25   0.54 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    24   1.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 34  PKARQFFLFNDILVYGNIVINKKKYN 59
           P   Q ++F +++ YGN  I+K++YN
Sbjct: 234 PNDAQPYIFQEVIDYGNEAISKREYN 259


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 42  FNDILVYGNIVINKKKYNKQHIIPLEEV 69
           +N+   Y N   NKK Y K +II +E++
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 159 CRKCGSVVCGPCSSKRYI 176
           C+ CG V+C   S KR++
Sbjct: 8   CQLCGKVLCSKASLKRHV 25


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 142 CMHCKKTQFTV----INRRHHCRKCGSVVCGPCSSKRYILRG 179
           C +C+K   ++    ++ R H   C   +CG   S+ ++L+G
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQG 60


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 142 CMHCKKTQFTVINRRHHCR 160
           C HC +    V N R H R
Sbjct: 40  CSHCDRQFVQVANLRRHLR 58


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,044
Number of Sequences: 429
Number of extensions: 3696
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 140,377
effective HSP length: 57
effective length of query: 211
effective length of database: 115,924
effective search space: 24459964
effective search space used: 24459964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)