GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004026-TA|BGIBMGA004026-PA|IPR007714|Protein of unknown
function DUF667
         (163 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl
          cyclase beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 15 NLSDFTRRAYGTQFLETLRVQIHANARLRRIYFS-ERLYTEEELPQ 59
          N+S++ R+ YG    E +R Q    A + +  FS  ++Y E  +P+
Sbjct: 8  NMSEYIRQVYGEDRWEEIRRQ----ASVEQPSFSVHQVYPENLIPR 49


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 113 TAGTVTPAVTEVGDEQPTDAQLTDETNIVVADDNPQ 148
           TAG +  A T   D  P D +  +     V +  PQ
Sbjct: 534 TAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCPPQ 569


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 113 TAGTVTPAVTEVGDEQPTDAQLTDETNIVVADDNPQ 148
           TAG +  A T   D  P D +  +     V +  PQ
Sbjct: 534 TAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCPPQ 569


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 101 EAIQEEVPSKHSTAGTVTPAVTEVGDEQPTDAQLTDETNI 140
           EA+  + P K+   G  T  + +  D   T A +   ++I
Sbjct: 440 EALNHDQPDKYDLIGNGTKLIIKNVDYADTGAYMCQASSI 479


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,304
Number of Sequences: 429
Number of extensions: 1543
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 140,377
effective HSP length: 53
effective length of query: 110
effective length of database: 117,640
effective search space: 12940400
effective search space used: 12940400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)