GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004024-TA|BGIBMGA004024-PA|undefined
         (121 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/23 (30%), Positives = 16/23 (69%)

Query: 86  KREDKQKTSEASEEHQRPVQKTR 108
           K  ++Q+  +A ++HQ+  Q+T+
Sbjct: 410 KMTEQQQQMQAQQQHQQQQQQTQ 432


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 93  TSEASEEHQRPVQKTRSGRTVTFPDYY 119
           TS+  +  Q  +  T +  T  + DYY
Sbjct: 123 TSDQHKWFQMSINNTNNNNTNKYKDYY 149


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 10  TWHSENRTFYVPKDLNTTSHVFLRQGPL 37
           +WH++    +VP D     ++ L  G L
Sbjct: 138 SWHTDQGEEFVPGDDYDGKYLVLPSGEL 165


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,765
Number of Sequences: 429
Number of extensions: 1636
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 121
length of database: 140,377
effective HSP length: 51
effective length of query: 70
effective length of database: 118,498
effective search space:  8294860
effective search space used:  8294860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)