GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004019-TA|BGIBMGA004019-PA|IPR006165|ATP-dependent DNA
helicase, 70 kDa subunit, IPR006164|Ku
         (469 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   9.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   9.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 259 DTKTTKVL--VKPDTDMDIDRVEEQ-EMPLLKSELLHCQEYGNEIIAFTDNE 307
           D  T+++L  VK   D+ ++   E+  +  L  +LL C+  G+ ++   DNE
Sbjct: 156 DLNTSQLLKQVKIPHDIAVNTTTEKGALVTLSVQLLSCEVNGSTLVYIGDNE 207


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 239 SNIEPKKVYLSNETNAVVTSDTKTTKVLVKPDT 271
           S+ EP  V++ +  N  + S+ K   +LV P T
Sbjct: 943 SDGEPLYVFVRSAPNFYMPSEPKAPMILVGPGT 975


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 251  ETNAVVTSDTKTTKVLVKPDTDMD 274
            + + V+ S +  +KV+ +PDTD +
Sbjct: 1129 QKDPVIFSTSFDSKVMTRPDTDSE 1152


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 147 ETPTFDRIVELNNSEIILKLINLSDSEYEIH 177
           E  TF    ++N+S  + +L   SD+E  +H
Sbjct: 88  EGNTFKTETQVNDSLKVTRLYEFSDNELLVH 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,950
Number of Sequences: 429
Number of extensions: 5519
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 4
length of query: 469
length of database: 140,377
effective HSP length: 60
effective length of query: 409
effective length of database: 114,637
effective search space: 46886533
effective search space used: 46886533
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)