GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004017-TA|BGIBMGA004017-PA|IPR000223|Peptidase S26A,
signal peptidase I
         (779 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    26   1.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   7.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 496 LLIGGTVFHAWSFFG-TSFIEEEHMTWYFFWNTFMFFVLIRSIVVVV 541
           L++ G++    SFFG    I E H     F  +F+ F+L+  I V V
Sbjct: 55  LIVLGSIIFVISFFGCCGAIRESHCMTITF-ASFLLFILLVQIAVAV 100


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 135 TSFFVTDYTEVDNNVTRHLD 154
           TS+F+ DY   D +VT  LD
Sbjct: 664 TSYFLNDYKHKDVDVTLPLD 683


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,557
Number of Sequences: 429
Number of extensions: 9283
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 2
length of query: 779
length of database: 140,377
effective HSP length: 63
effective length of query: 716
effective length of database: 113,350
effective search space: 81158600
effective search space used: 81158600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)