GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004016-TA|BGIBMGA004016-PA|undefined
         (117 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   3.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   6.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   6.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   8.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 60  YFIGCLPFVFAA 71
           +F+GC  F+FAA
Sbjct: 297 WFLGCTIFLFAA 308


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 60  YFIGCLPFVFAA 71
           +  GC+ FVFAA
Sbjct: 265 WMAGCMMFVFAA 276


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 104 PILAPQRNPCA 114
           PIL P RNP +
Sbjct: 2   PILIPHRNPAS 12


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 79  RTAIRTALGCGQGMLPLSRADYFST 103
           R  +RT +  G+G +P+  ++   T
Sbjct: 396 RGQLRTKIESGEGTIPVKSSEGIQT 420


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 28  HSHIVQLVAARCHAPL 43
           HSH +  ++A+ H P+
Sbjct: 258 HSHTIIYLSAKGHRPI 273


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.334    0.142    0.504 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,853
Number of Sequences: 429
Number of extensions: 729
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 117
length of database: 140,377
effective HSP length: 51
effective length of query: 66
effective length of database: 118,498
effective search space:  7820868
effective search space used:  7820868
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.6 bits)
S2: 39 (19.8 bits)