GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004015-TA|BGIBMGA004015-PA|undefined
         (137 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.38 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.38 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   3.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   3.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 56  NASTNPRAVSYRAALP 71
           NA T P AVSY  A+P
Sbjct: 94  NAGTPPEAVSYNVAVP 109


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.6 bits (51), Expect = 0.38
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 56  NASTNPRAVSYRAALP 71
           NA T P AVSY  A+P
Sbjct: 94  NAGTPPEAVSYNVAVP 109


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 48  RSEYRRSGNASTNPRAVSYRAALPINLLGTYERD 81
           R E    G   +N R +  R ++P N L T E+D
Sbjct: 383 RMENNLRGETQSNYREMEKRQSVPANDLLTTEKD 416


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 73  NLLGTYERDAGAVAGGRDNARPAVTDPITRRGSWWIVSNAIAWFTI 118
           N L  Y  +  AV    D A     D    RG  WI+S+ +  F +
Sbjct: 342 NSLLPYSPENQAVVARHDEAMIFPADVKINRGLXWIISDRMPVFLL 387


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 112 AIAWFTISAETVIPAIK 128
           A  WF ++  TV+P +K
Sbjct: 176 AFTWFWVTPFTVLPLLK 192


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 112 AIAWFTISAETVIPAIK 128
           A  WF ++  TV+P +K
Sbjct: 176 AFTWFWVTPFTVLPLLK 192


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.135    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,270
Number of Sequences: 429
Number of extensions: 1741
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 140,377
effective HSP length: 52
effective length of query: 85
effective length of database: 118,069
effective search space: 10035865
effective search space used: 10035865
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)