GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004013-TA|BGIBMGA004013-PA|IPR001993|Mitochondrial
substrate carrier, IPR008994|Nucleic acid-binding, OB-fold
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   0.83 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   4.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   4.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.8  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.7  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.7  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 64  DQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSK 100
           ++   E+ TKL + ++  +V    DIT+  + KK SK
Sbjct: 81  EEKFRERTTKLDSEQVNRLVNNCKDITESNSCKKSSK 117


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 96  KKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKKDFTSK 141
           ++ S+++Y    ER+ + Y   +    Y +      QD  +  TSK
Sbjct: 32  ERTSRKRYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSK 77


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 96  KKVSKEQYKEDIERQTELYGRLKSTFNYNKAPPRGWQDGKKDFTSK 141
           ++ S+++Y    ER+ + Y   +    Y +      QD  +  TSK
Sbjct: 32  ERTSRKRYSRSREREQKSYKNEREYRKYRETSKERSQDRTERETSK 77


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 123 YNKAPPRGWQDGKKDFTSKPTYTKFHVFDEN 153
           YN A     +     F   P YTK+ + DE+
Sbjct: 213 YNNADDSFQRLTSSTFVYDPRYTKYTINDES 243


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 53 RENMQNWRHSPDQALPEKLT 72
          R+  +NW H     LPEK T
Sbjct: 62 RKLEENWIHVDISFLPEKST 81


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 72  TKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELY 114
           T  ++H   +VV  FG +   + G+ +    + ED+    ++Y
Sbjct: 317 TCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIY 359


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 72  TKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQTELY 114
           T  ++H   +VV  FG +   + G+ +    + ED+    ++Y
Sbjct: 23  TCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIY 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,871
Number of Sequences: 429
Number of extensions: 2189
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)