GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004010-TA|BGIBMGA004010-PA|IPR001683|Phox-like,
IPR000276|Rhodopsin-like GPCR superfamily
         (471 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.34 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   3.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 2/103 (1%)

Query: 308 PLSRALSHVADLHEKIENLRLEQSNTDFFILSEHIKDYLGLIGSIKDVFHERVKVFQNWQ 367
           P ++ L+ +  L   I+N+    S      + + +   L  + + K ++H R       Q
Sbjct: 7   PCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH-RQHSKNEQQ 65

Query: 368 HAQMQLTKRRENKAKAELSNRPDKAEQAANEIVEWETKVERNQ 410
             +M+  + RE + + E S+R    +Q   +  + + + ++ Q
Sbjct: 66  RKEMEQMREREREQR-EHSDRVTSQQQQQQQQQQQQDQQQQQQ 107


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 12  TVDINNDSRDDEDIFASAVQEVSLDPEVNGAREGLE---KVSIDDTPASISTSLN 63
           T+D+       E IF S+ + V+LD +  G R  L     +++ D P  +S +L+
Sbjct: 94  TIDLELIGTQAEGIFGSSEECVALDLDGQGGRTFLRVLLHLAMHDYPPLVSGALH 148


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 12  TVDINNDSRDDEDIFASAVQEVSLDPEVNGAREGLE---KVSIDDTPASISTSLN 63
           T+D+       E IF S+ + V+LD +  G R  L     +++ D P  +S +L+
Sbjct: 62  TIDLELIGTQAEGIFGSSEECVALDLDGQGGRTFLRVLLHLAMHDYPPLVSGALH 116


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 43  REGLEKVSIDDTPASISTSLNSPVMEEIATERSNN 77
           ++ +E +  DD    +ST +N  +  E   E  N+
Sbjct: 293 KKEVEDMEYDDIKTELSTGMNDDIPPETEEEEEND 327


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 82   VTEPQKIGEGMSSYVAYRVFT 102
            VT   ++GEG SS VA +V T
Sbjct: 1289 VTGSTRVGEGQSSKVAAQVPT 1309


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 82   VTEPQKIGEGMSSYVAYRVFT 102
            VT   ++GEG SS VA +V T
Sbjct: 1285 VTGSTRVGEGQSSKVAAQVPT 1305


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,174
Number of Sequences: 429
Number of extensions: 4740
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 6
length of query: 471
length of database: 140,377
effective HSP length: 60
effective length of query: 411
effective length of database: 114,637
effective search space: 47115807
effective search space used: 47115807
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)