GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA004005-TA|BGIBMGA004005-PA|undefined
         (185 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 19  TKGLVSPGVAGPAPIIDD 36
           + G+VS G  GPA  +D+
Sbjct: 164 SSGVVSAGECGPAADVDE 181


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 87  DNPPLAPVADST 98
           D PPL+P +DS+
Sbjct: 439 DQPPLSPQSDSS 450


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 31  APIIDDFVPIAVGPAIIDEFEPISV 55
           A I+  F+ +   PA+ D  +PI +
Sbjct: 496 ASIVGTFIILCEAPALRDNTKPIDM 520


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.142    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,725
Number of Sequences: 429
Number of extensions: 2151
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 185
length of database: 140,377
effective HSP length: 54
effective length of query: 131
effective length of database: 117,211
effective search space: 15354641
effective search space used: 15354641
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)